RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1020641" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1020641 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26717932 26717932 PRJNA1020641_P_NODE_5861_length_250_cov_0.870056_g5818_i0 PRJNA1020641 5861 250 0.870056 2.17514 Nocardioides sp. DS6 3231482 Bacteria Bacteria 40.8 0.0415   NR WP_367991583.1 3231482 g5818 i0 33.3 0.828 69 46 82.8 0 240 34 16 84 WP_367991583.1 hypothetical protein [Nocardioides sp. DS6] diamond 207 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides eburneus
28551002 28551002 PRJNA1020641_P_NODE_6907_length_244_cov_0.900585_g6864_i0 PRJNA1020641 6907 244 0.900585 2.1974274 Olsenella uli 133926 Bacteria Bacteria 61.2 3.83e-9   NR WP_347711276.1 133926 g6864 i0 65.8 1.94262295081967 38 13 46.7 0 114 1 4 41 WP_347711276.1 sister chromatid cohesion protein PDS5 [Olsenella uli] diamond 474 61.2 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales Atopobiaceae Olsenella Olsenella uli
30563922 30563922 PRJNA1020641_P_NODE_6193_length_248_cov_0.880000_g6150_i0 PRJNA1020641 6193 248 0.88 2.1824 PVC group 1783257 Bacteria Bacteria 42.7 0.0379   NR WP_369069502.1 2044856 g6150 i0 43.6 1.27016129032258 55 28 62.9 1 5 160 95 149 WP_369069502.1 acyl-CoA dehydrogenase [Kineococcus terrestris] diamond 315 43.1 0.990719257540603 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Kineococcus Kineococcus terrestris
31868019 31868019 PRJNA1020641_P_NODE_4637_length_280_cov_1.000000_g4594_i0 PRJNA1020641 4637 280 1 2.8 Kitasatospora phosalacinea 2065 Bacteria Bacteria 43.5 0.0299   NR WP_376055136.1 2065 g4594 i0 38.9 0.578571428571429 54 32 57.9 1 254 93 29 81 WP_376055136.1 amidohydrolase [Kitasatospora phosalacinea] diamond 162 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora phosalacinea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;