RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1016321" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1016321 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28953730 28953730 PRJNA1016321_P_NODE_40148_length_279_cov_3.538835_g39917_i0 PRJNA1016321 40148 279 3.538835 9.87334965 Halalkalicoccus 332246 Archaea Archaea 149 2.5299999999999993e-42   NR WP_008418065.1 413810 g39917 i0 79.8 3.82795698924731 89 18 95.7 0 269 3 47 135 WP_008418065.1 urease accessory protein UreD [Halalkalicoccus jeotgali] diamond 1068 149 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
29877043 29877043 PRJNA1016321_P_NODE_51151_length_247_cov_0.885057_g50920_i0 PRJNA1016321 51151 247 0.885057 2.18609079 Nitrososphaera sp. 1971748 Archaea Archaea 119 1.33e-29   NR MCI0563357.1 1971748 g50920 i0 65 0.97165991902834 80 28 97.2 0 1 240 262 341 MCI0563357.1 SNF2-related protein [Nitrososphaera sp.] diamond 240 119 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
32879048 32879048 PRJNA1016321_P_NODE_48220_length_250_cov_3.282486_g47989_i0 PRJNA1016321 48220 250 3.282486 8.206215 Nanobdellota archaeon 2026764 Archaea Archaea 117 8.83e-29   NR MDO8508835.1 2026764 g47989 i0 77.9 0.924 77 17 92.4 0 18 248 359 435 MDO8508835.1 proline--tRNA ligase [Nanoarchaeota archaeon] diamond 231 117 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;