RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1016321" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1016321 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28171865 28171865 PRJNA1016321_P_NODE_17966_length_456_cov_1.746736_g17736_i0 PRJNA1016321 17966 456 1.746736 7.96511616 Grapevine wood holobiome associated mononegaambi virus 1 3385175 Viruses Viruses 63.5 9.58e-9   NR XLV09863.1 3385175 g17736 i0 38.3 1.06578947368421 81 50 53.3 0 442 200 180 260 XLV09863.1 hypothetical protein [Grapevine wood holobiome associated mononegaambi virus 1] diamond 486 63.5 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales     Grapevine wood holobiome associated mononegaambi virus 1
29908681 29908681 PRJNA1016321_P_NODE_4431_length_966_cov_2.893617_g4260_i0 PRJNA1016321 4431 966 2.893617 27.95234022 Plasmopara viticola lesion associated mononegaambi virus 9 2692021 Viruses Viruses 130 1.8799999999999998e-32   NR WKE35292.1 2692021 g4260 i0 42.1 0.493788819875776 159 92 49.4 0 785 309 4 162 WKE35292.1 hypothetical protein [Plasmopara viticola lesion associated mononegaambi virus 9] diamond 477 130 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Mymonaviridae Penicillimonavirus Penicillimonavirus etaplasmoparae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;