RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1016321" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1016321 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12913199 12913199 PRJNA1016321_P_NODE_34751_length_304_cov_2.333333_g34520_i0 PRJNA1016321 34751 304 2.333333 7.09333232 Sus scrofa 9823 Chordata Chordata 157 3.2499999999999992e-43   NR XP_020938199.1 9823 g34520 i0 86.8 1.62828947368421 91 5 82.9 1 253 2 47 137 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 495 157 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
28045572 28045572 PRJNA1016321_P_NODE_38665_length_285_cov_3.367925_g38434_i0 PRJNA1016321 38665 285 3.367925 9.59858625 Saccopteryx bilineata 59482 Chordata Chordata 68.2 7.32e-11   NR XP_066094014.1 59482 g38434 i0 62.9 0.736842105263158 70 26 73.7 0 73 282 488 557 XP_066094014.1 serine/threonine-protein kinase 4 isoform X1 [Saccopteryx bilineata] diamond 210 68.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Emballonuridae Saccopteryx Saccopteryx bilineata
28771772 28771772 PRJNA1016321_P_NODE_42587_length_269_cov_2.928571_g42356_i0 PRJNA1016321 42587 269 2.928571 7.87785599 Staurois parvus 386267 Chordata Chordata 49.7 1.29e-4   NR CAI9536211.1 386267 g42356 i0 54.2 0.535315985130111 48 15 45.7 3 49 171 178 225 CAI9536211.1 unnamed protein product [Staurois parvus] diamond 144 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;