RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1013345" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1013345 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12911918 12911918 PRJNA1013345_P_NODE_25031_length_163_cov_1.758621_g24901_i0 PRJNA1013345 25031 163 1.758621 2.86655223 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 89.4 3.43e-19   NR HEY9227145.1 2026741 g24901 i0 75.5 0.975460122699387 53 13 97.5 0 3 161 109 161 HEY9227145.1 RagB/SusD family nutrient uptake outer membrane protein [Gemmatimonadaceae bacterium] diamond 159 89.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
20559463 20559463 PRJNA1013345_P_NODE_22057_length_167_cov_1.700000_g21927_i0 PRJNA1013345 22057 167 1.7 2.839 Longimicrobium sp. 2029185 Bacteria Bacteria 122 1.3399999999999998e-31   NR HYW13849.1 2029185 g21927 i0 100 0.988023952095808 55 0 98.8 0 1 165 217 271 HYW13849.1 glutathionylspermidine synthase family protein [Longimicrobium sp.] diamond 165 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30477346 30477346 PRJNA1013345_P_NODE_32093_length_157_cov_0.927273_g31963_i0 PRJNA1013345 32093 157 0.927273 1.45581861 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 53.5 1.82e-6   NR MBW3629193.1 2026742 g31963 i0 50 1.8343949044586 46 23 87.9 0 1 138 368 413 MBW3629193.1 TonB-dependent receptor [Gemmatimonadota bacterium] diamond 288 53.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31330360 31330360 PRJNA1013345_P_NODE_7156_length_233_cov_1.532258_g7026_i0 PRJNA1013345 7156 233 1.532258 3.57016114 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.9 0.0116   NR HEY4219668.1 2026741 g7026 i0 42.4 0.849785407725322 66 26 85 3 31 228 60 113 HEY4219668.1 UDP-2,3-diacylglucosamine diphosphatase [Gemmatimonadaceae bacterium] diamond 198 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;