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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA1013345" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1013345 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26654724 26654724 PRJNA1013345_P_NODE_18701_length_174_cov_1.866142_g18571_i0 PRJNA1013345 18701 174 1.866142 3.24708708 Orcinus orca 9733 Chordata Chordata 48.1 1.82e-4   NR XP_049565758.1 9733 g18571 i0 51.2 1.41379310344828 41 20 70.7 0 49 171 229 269 XP_049565758.1 uncharacterized protein LOC125964388 [Orcinus orca] diamond 246 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Orcinus Orcinus orca
26749568 26749568 PRJNA1013345_P_NODE_4121_length_294_cov_0.716599_g3992_i0 PRJNA1013345 4121 294 0.716599 2.10680106 Bufotes viridis 30338 Chordata Chordata 44.7 0.0137   NR CAK8609802.1 30338 g3992 i0 67.9 0.285714285714286 28 9 28.6 0 209 292 1 28 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 84 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27129233 27129233 PRJNA1013345_P_NODE_21582_length_168_cov_1.685950_g21452_i0 PRJNA1013345 21582 168 1.68595 2.832396 Polypterus senegalus 55291 Chordata Chordata 42 0.0253   NR XP_039606434.1 55291 g21452 i0 80.8 31.1071428571429 26 5 46.4 0 2 79 92 117 XP_039606434.1 potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 isoform X2 [Polypterus senegalus] diamond 5226 42 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
27603789 27603789 PRJNA1013345_P_NODE_2864_length_341_cov_4.897959_g2737_i0 PRJNA1013345 2864 341 4.897959 16.70204019 Bufotes viridis 30338 Chordata Chordata 45.8 0.00899   NR CAK8609802.1 30338 g2737 i0 64.5 0.483870967741935 31 11 27.3 0 248 340 1 31 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 165 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27666883 27666883 PRJNA1013345_P_NODE_16924_length_178_cov_1.557252_g16794_i0 PRJNA1013345 16924 178 1.557252 2.77190856 Bufotes viridis 30338 Chordata Chordata 43.5 0.00804   NR CAK8629749.1 30338 g16794 i0 70.4 0.455056179775281 27 8 45.5 0 143 63 335 361 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 81 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27887632 27887632 PRJNA1013345_P_NODE_27005_length_161_cov_2.517544_g26875_i0 PRJNA1013345 27005 161 2.517544 4.05324584 Phyllostomus discolor 89673 Chordata Chordata 41.6 0.0316   NR XP_035869557.1 89673 g26875 i0 35.3 0.950310559006211 51 32 95 1 4 156 62 111 XP_035869557.1 LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Phyllostomus discolor] diamond 153 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
28613941 28613941 PRJNA1013345_P_NODE_2867_length_341_cov_4.204082_g2737_i1 PRJNA1013345 2867 341 4.204082 14.33591962 Bufotes viridis 30338 Chordata Chordata 45.8 0.00899   NR CAK8609802.1 30338 g2737 i1 64.5 0.483870967741935 31 11 27.3 0 248 340 1 31 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 165 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
29403305 29403305 PRJNA1013345_P_NODE_23149_length_165_cov_1.635593_g23019_i0 PRJNA1013345 23149 165 1.635593 2.69872845 Bufotes viridis 30338 Chordata Chordata 46.2 7.55e-4   NR CAK8629749.1 30338 g23019 i0 60.7 0.509090909090909 28 11 50.9 0 27 110 337 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 84 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
29971666 29971666 PRJNA1013345_P_NODE_11091_length_197_cov_2.993333_g10961_i0 PRJNA1013345 11091 197 2.993333 5.89686601 Staurois parvus 386267 Chordata Chordata 53.1 2.31e-7   NR CAI9540006.1 386267 g10961 i0 56.8 0.67005076142132 44 19 67 0 31 162 1 44 CAI9540006.1 unnamed protein product, partial [Staurois parvus] diamond 132 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30034963 30034963 PRJNA1013345_P_NODE_13091_length_187_cov_1.807143_g12961_i0 PRJNA1013345 13091 187 1.807143 3.37935741 Canis lupus dingo 286419 Chordata Chordata 52.4 6.74e-6   NR XP_048968551.1 286419 g12961 i0 92.6 0.433155080213904 27 2 43.3 0 105 185 411 437 XP_048968551.1 DNA polymerase iota isoform X7 [Canis lupus dingo] diamond 81 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
30153224 30153224 PRJNA1013345_P_NODE_13452_length_186_cov_1.467626_g13322_i0 PRJNA1013345 13452 186 1.467626 2.72978436 Bufonidae 8382 Chordata Chordata 47.8 3.09e-4   NR XP_044141565.1 30331 g13322 i0 39.7 4.7741935483871 58 35 93.5 0 177 4 338 395 XP_044141565.1 cytidine monophosphate-N-acetylneuraminic acid hydroxylase-like [Bufo gargarizans] diamond 888 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo gargarizans
30603466 30603466 PRJNA1013345_P_NODE_21753_length_168_cov_1.049587_g21623_i0 PRJNA1013345 21753 168 1.049587 1.76330616 Staurois parvus 386267 Chordata Chordata 53.1 1.62e-7   NR CAI9540006.1 386267 g21623 i0 59.1 0.785714285714286 44 18 78.6 0 138 7 1 44 CAI9540006.1 unnamed protein product, partial [Staurois parvus] diamond 132 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30982913 30982913 PRJNA1013345_P_NODE_33014_length_154_cov_7.355140_g32884_i0 PRJNA1013345 33014 154 7.35514 11.3269156 Bufotes viridis 30338 Chordata Chordata 42.4 0.0148   NR CAK8609802.1 30338 g32884 i0 57.6 0.642857142857143 33 14 64.3 0 51 149 1 33 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 99 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31457072 31457072 PRJNA1013345_P_NODE_13776_length_185_cov_1.985507_g13646_i0 PRJNA1013345 13776 185 1.985507 3.67318795 Pleurodeles waltl 8319 Chordata Chordata 42.4 0.0197   NR KAJ1170931.1 8319 g13646 i0 54.2 0.778378378378378 48 20 76.2 2 3 143 153 199 KAJ1170931.1 hypothetical protein NDU88_002802 [Pleurodeles waltl] diamond 144 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
31741468 31741468 PRJNA1013345_P_NODE_29297_length_159_cov_2.017857_g29167_i0 PRJNA1013345 29297 159 2.017857 3.20839263 Engystomops pustulosus 76066 Chordata Chordata 45.4 1.99e-4   NR KAG8536220.1 76066 g29167 i0 46.3 1.41509433962264 41 22 77.4 0 1 123 38 78 KAG8536220.1 hypothetical protein GDO81_026873 [Engystomops pustulosus] diamond 225 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
32342992 32342992 PRJNA1013345_P_NODE_16839_length_178_cov_2.190840_g16709_i0 PRJNA1013345 16839 178 2.19084 3.8996952 Bucorvus abyssinicus 153643 Chordata Chordata 42.7 0.00296   NR NWR65745.1 153643 g16709 i0 60 4.17977528089888 30 12 50.6 0 175 86 1 30 NWR65745.1 ZNF22 protein [Bucorvus abyssinicus] diamond 744 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Bucerotiformes Bucorvidae Bucorvus Bucorvus abyssinicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;