RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1013345" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1013345 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27509028 27509028 PRJNA1013345_P_NODE_4183_length_292_cov_1.420408_g4054_i0 PRJNA1013345 4183 292 1.420408 4.14759136 Aliarcobacter sp. 2321116 Bacteria Bacteria 115 3.0099999999999993e-28   NR MBP6714533.1 2321116 g4054 i0 66.3 0.883561643835616 86 28 88.4 1 280 23 112 196 MBP6714533.1 hypothetical protein [Aliarcobacter sp.] diamond 258 115 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter sp.
30508807 30508807 PRJNA1013345_P_NODE_22293_length_166_cov_3.823529_g22163_i0 PRJNA1013345 22293 166 3.823529 6.34705814 Helicobacter pylori 210 Bacteria Bacteria 61.2 4.97e-10   NR GAA8684133.1 210 g22163 i0 84.2 0.686746987951807 38 5 66.9 1 113 3 2 39 GAA8684133.1 hypothetical protein Kyoto145A_0980 [Helicobacter pylori] diamond 114 61.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31646527 31646527 PRJNA1013345_P_NODE_33077_length_154_cov_3.654206_g32947_i0 PRJNA1013345 33077 154 3.654206 5.62747724 Helicobacter pylori 210 Bacteria Bacteria 49.3 2.79e-6   NR GAA8799114.1 210 g32947 i0 100 0.798701298701299 41 0 79.9 0 152 30 13 53 GAA8799114.1 hypothetical protein Kyoto149A_1670 [Helicobacter pylori] diamond 123 49.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;