RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1011844" and tax_phylum = "Candidatus Rifleibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Rifleibacteriota · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1011844 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18007856 18007856 PRJNA1011844_P_NODE_13495_length_1556_cov_13.416049_g8664_i1 PRJNA1011844 13495 1556 13.416049 208.75372244 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 227 6.61e-65   NR NLI75216.1 2053586 g8664 i1 43.8 0.642030848329049 333 163 62.9 8 518 1495 88 403 NLI75216.1 hypothetical protein [Candidatus Rifleibacteriota bacterium] diamond 999 227 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium
21833240 21833240 PRJNA1011844_P_NODE_163558_length_238_cov_3.012121_g154977_i0 PRJNA1011844 163558 238 3.012121 7.16884798 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 71.2 3.17e-12   NR MBI4871791.1 2053586 g154977 i0 51.3 5.72268907563025 78 35 97.1 2 237 7 474 549 MBI4871791.1 response regulator [Candidatus Rifleibacteriota bacterium] diamond 1362 71.2 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium
23108195 23108195 PRJNA1011844_P_NODE_11999_length_1646_cov_15.834711_g8664_i0 PRJNA1011844 11999 1646 15.834711 260.63934306 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 227 1.3800000000000002e-64   NR NLI75216.1 2053586 g8664 i0 43.8 0.606925880923451 333 163 59.4 8 1039 62 88 403 NLI75216.1 hypothetical protein [Candidatus Rifleibacteriota bacterium] diamond 999 227 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium
27824637 27824637 PRJNA1011844_P_NODE_156604_length_244_cov_0.900585_g148024_i0 PRJNA1011844 156604 244 0.900585 2.1974274 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 47.8 6.62e-4   NR MBF0548295.1 2053586 g148024 i0 36.9 0.799180327868853 65 36 79.9 1 43 237 111 170 MBF0548295.1 tetratricopeptide repeat protein [Candidatus Rifleibacteriota bacterium] diamond 195 47.8 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium
28645567 28645567 PRJNA1011844_P_NODE_53307_length_589_cov_11.449612_g8664_i2 PRJNA1011844 53307 589 11.449612 67.43821468 Candidatus Rifleibacteriota bacterium 2053586 Bacteria Bacteria 100 3.8e-21   NR NLI75216.1 2053586 g8664 i2 49.1 0.590831918505942 116 51 59.1 1 105 452 296 403 NLI75216.1 hypothetical protein [Candidatus Rifleibacteriota bacterium] diamond 348 100 1 Bacteria Bacteria candidate phyla   Candidatus Rifleibacteriota         Candidatus Rifleibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;