RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1011844" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA1011844 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30382688 30382688 PRJNA1011844_P_NODE_117913_length_287_cov_1.093458_g109337_i0 PRJNA1011844 117913 287 1.093458 3.13822446 Methanobrevibacter sp. 66852 Archaea Archaea 66.2 3.5e-10   NR MBR6024093.1 66852 g109337 i0 44.3 0.9198606271777 88 45 92 4 280 17 361 444 MBR6024093.1 hypothetical protein [Methanobrevibacter sp.] diamond 264 66.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31994685 31994685 PRJNA1011844_P_NODE_77298_length_412_cov_12.289086_g68794_i0 PRJNA1011844 77298 412 12.289086 50.63103432 Methanobrevibacter millerae 230361 Archaea Archaea 44.7 0.0404   NR WP_149732656.1 230361 g68794 i0 35 0.58252427184466 80 50 56.8 1 333 100 83 162 WP_149732656.1 radical SAM protein [Methanobrevibacter millerae] diamond 240 44.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
32208427 32208427 PRJNA1011844_P_NODE_106918_length_310_cov_2.291139_g98345_i0 PRJNA1011844 106918 310 2.291139 7.1025309 root 1 Root_unresolved Root_unresolved 99.4 7.26e-23   NR MBQ2635466.1 66852 g98345 i0 59.2 2.21612903225806 76 31 73.5 0 14 241 187 262 MBQ2635466.1 formate/nitrite transporter family protein [Methanobrevibacter sp.] diamond 687 100 0.994 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;