RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1011833" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1011833 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27761566 27761566 PRJNA1011833_S_NODE_40344_length_183_cov_1.671429_g39924_i0 PRJNA1011833 40344 183 1.671429 3.05871507 Mycoplasma wenyonii 65123 Bacteria Bacteria 122 1e-30   NR WP_112665766.1 65123 g39924 i0 100 0.983606557377049 60 0 98.4 0 2 181 262 321 WP_112665766.1 elongation factor G [Mycoplasma wenyonii] diamond 180 122 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
27824573 27824573 PRJNA1011833_S_NODE_58104_length_152_cov_1.045872_g57684_i0 PRJNA1011833 58104 152 1.045872 1.58972544 Mycoplasma wenyonii 65123 Bacteria Bacteria 98.2 3.07e-22   NR WP_274506156.1 65123 g57684 i0 94 0.986842105263158 50 3 98.7 0 151 2 470 519 WP_274506156.1 GTP-binding protein [Mycoplasma wenyonii] diamond 150 98.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
28297953 28297953 PRJNA1011833_S_NODE_51566_length_161_cov_1.220339_g51146_i0 PRJNA1011833 51566 161 1.220339 1.96474579 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 103 3.32e-25   NR WP_187150589.1 432608 g51146 i0 98.1 0.987577639751553 53 1 98.8 0 159 1 104 156 WP_187150589.1 FoF1 ATP synthase subunit gamma [Candidatus Mycoplasma haematobovis] diamond 159 103 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis
30003242 30003242 PRJNA1011833_S_NODE_55911_length_154_cov_1.297297_g55491_i0 PRJNA1011833 55911 154 1.297297 1.99783738 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 98.2 8.809999999999999e-24   NR WP_187150533.1 432608 g55491 i0 98 0.993506493506494 51 1 99.4 0 154 2 122 172 WP_187150533.1 hypothetical protein [Candidatus Mycoplasma haematobovis] diamond 153 98.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis
30729760 30729760 PRJNA1011833_S_NODE_43674_length_176_cov_1.082707_g43254_i0 PRJNA1011833 43674 176 1.082707 1.90556432 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 115 8.07e-31   NR WP_187149865.1 432608 g43254 i0 94.6 1.89204545454545 56 3 95.5 0 3 170 33 88 WP_187149865.1 hypothetical protein [Candidatus Mycoplasma haematobovis] diamond 333 115 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis
32847391 32847391 PRJNA1011833_S_NODE_52120_length_160_cov_1.230769_g51700_i0 PRJNA1011833 52120 160 1.230769 1.9692304 Mycoplasma wenyonii 65123 Bacteria Bacteria 66.2 5.96e-11   NR WP_112665122.1 65123 g51700 i0 80 0.75 40 8 75 0 128 9 914 953 WP_112665122.1 DUF3713 domain-containing protein [Mycoplasma wenyonii] diamond 120 66.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;