contig_metadata
9 rows where analysis = "diamond", bioproject = "PRJNA1011833" and tax_phylum = "Bacillota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27445814 | 27445814 | PRJNA1011833_S_NODE_28223_length_223_cov_1.038889_g27803_i0 | PRJNA1011833 | 28223 | 223 | 1.038889 | 2.31672247 | unclassified Amedibacterium | 3088137 | Bacteria | Bacteria | 42 | 0.05 | NR | WP_233511338.1 | 3088137 | g27803 | i0 | 42.6 | 0.726457399103139 | 54 | 27 | 70 | 3 | 19 | 174 | 188 | 239 | WP_233511338.1 MULTISPECIES: hypothetical protein [unclassified Amedibacterium] | diamond | 162 | 42 | 1 | Bacteria | Bacillati | Bacillota | Erysipelotrichia | Erysipelotrichales | Erysipelotrichaceae | Amedibacterium | |||
| 27824571 | 27824571 | PRJNA1011833_S_NODE_34104_length_200_cov_2.369427_g33684_i0 | PRJNA1011833 | 34104 | 200 | 2.369427 | 4.738854 | Holdemanella biformis | 1735 | Bacteria | Bacteria | 43.1 | 0.0155 | NR | WP_227976277.1 | 1735 | g33684 | i0 | 39 | 1.23 | 82 | 31 | 97.5 | 3 | 5 | 199 | 153 | 232 | WP_227976277.1 glycoside hydrolase family 13 protein [Holdemanella biformis] | diamond | 246 | 43.1 | 1 | Bacteria | Bacillati | Bacillota | Erysipelotrichia | Erysipelotrichales | Erysipelotrichaceae | Holdemanella | Holdemanella biformis | ||
| 28006468 | 28006468 | PRJNA1011833_S_NODE_51585_length_161_cov_1.220339_g51165_i0 | PRJNA1011833 | 51585 | 161 | 1.220339 | 1.96474579 | Clostridia | 186801 | Bacteria | Bacteria | 100 | 4.53e-24 | NR | MCI5596461.1 | 1898203 | g51165 | i0 | 81.1 | 18.6335403726708 | 53 | 10 | 98.8 | 0 | 3 | 161 | 131 | 183 | MCI5596461.1 UDP-glucose 4-epimerase GalE [Lachnospiraceae bacterium] | diamond | 3000 | 101 | 0.99009900990099 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Lachnospiraceae bacterium | |||
| 28606128 | 28606128 | PRJNA1011833_S_NODE_10727_length_360_cov_5.182965_g10308_i0 | PRJNA1011833 | 10727 | 360 | 5.182965 | 18.658674 | Bacteria | 2 | Bacteria | Bacteria | 58.9 | 2.67e-7 | NR | WP_029699112.1 | 1391647 | g10308 | i0 | 32.2 | 5.675 | 115 | 69 | 93.3 | 6 | 359 | 24 | 122 | 230 | WP_029699112.1 DEAD/DEAH box helicase [Clostridium sp. Ade.TY] | diamond | 2043 | 58.9 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Clostridium sp. Ade.TY | ||
| 29268978 | 29268978 | PRJNA1011833_S_NODE_55349_length_155_cov_1.196429_g54929_i0 | PRJNA1011833 | 55349 | 155 | 1.196429 | 1.85446495 | root | 1 | Root_unresolved | Root_unresolved | 42.7 | 0.00609 | NR | WP_262458101.1 | 1496 | g54929 | i0 | 48.7 | 3.01935483870968 | 39 | 17 | 69.7 | 1 | 42 | 149 | 68 | 106 | WP_262458101.1 endonuclease/exonuclease/phosphatase family protein [Clostridioides difficile] | diamond | 468 | 42.7 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Peptostreptococcales | Peptostreptococcaceae | Clostridioides | Clostridioides difficile | ||
| 29710860 | 29710860 | PRJNA1011833_S_NODE_11310_length_352_cov_8.896440_g10890_i0 | PRJNA1011833 | 11310 | 352 | 8.89644 | 31.3154688 | Bacteria | 2 | Bacteria | Bacteria | 112 | 8.130000000000001e-27 | NR | WP_221880430.1 | 1399 | g10890 | i0 | 50.5 | 15.7244318181818 | 103 | 51 | 87.8 | 0 | 344 | 36 | 305 | 407 | WP_221880430.1 NAD-dependent succinate-semialdehyde dehydrogenase, partial [Cytobacillus firmus] | diamond | 5535 | 113 | 0.991150442477876 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Cytobacillus | Cytobacillus firmus | ||
| 30698122 | 30698122 | PRJNA1011833_S_NODE_16594_length_297_cov_1.854331_g16174_i0 | PRJNA1011833 | 16594 | 297 | 1.854331 | 5.50736307 | Leuconostoc pseudomesenteroides | 33968 | Bacteria | Bacteria | 43.5 | 0.0158 | NR | WP_349550031.1 | 33968 | g16174 | i0 | 27.2 | 0.818181818181818 | 81 | 53 | 77.8 | 2 | 51 | 281 | 30 | 108 | WP_349550031.1 single-stranded DNA-binding protein [Leuconostoc pseudomesenteroides] | diamond | 243 | 43.5 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Leuconostoc pseudomesenteroides | ||
| 31267030 | 31267030 | PRJNA1011833_S_NODE_38515_length_188_cov_0.958621_g38095_i0 | PRJNA1011833 | 38515 | 188 | 0.958621 | 1.80220748 | Oscillospiraceae bacterium | 2485925 | Bacteria | Bacteria | 42.7 | 0.0174 | NR | MCC8043763.1 | 2485925 | g38095 | i0 | 40.5 | 0.670212765957447 | 42 | 24 | 65.4 | 1 | 137 | 15 | 100 | 141 | MCC8043763.1 sugar phosphate isomerase/epimerase [Oscillospiraceae bacterium] | diamond | 126 | 42.7 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Oscillospiraceae | Oscillospiraceae bacterium | |||
| 32057768 | 32057768 | PRJNA1011833_S_NODE_5418_length_455_cov_12.621359_g5006_i0 | PRJNA1011833 | 5418 | 455 | 12.621359 | 57.42718345 | Lachnospiraceae bacterium | 1898203 | Bacteria | Bacteria | 87.4 | 3.45e-19 | NR | MBQ5561215.1 | 1898203 | g5006 | i0 | 40.7 | 1.21978021978022 | 86 | 51 | 56.7 | 0 | 292 | 35 | 16 | 101 | MBQ5561215.1 thioredoxin [Lachnospiraceae bacterium] | diamond | 555 | 87.4 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Lachnospiraceae bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;