RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1011833" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1011833 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27002852 27002852 PRJNA1011833_S_NODE_4002_length_499_cov_20.945175_g3602_i0 PRJNA1011833 4002 499 20.945175 104.51642325 Actinomycetota bacterium 2900548 Bacteria Bacteria 129 9.93e-33   NR MBM3680260.1 2900548 g3602 i0 46.7 1.80360721442886 150 67 87.8 4 498 61 182 322 MBM3680260.1 malate dehydrogenase [Actinomycetota bacterium] diamond 900 129 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28574481 28574481 PRJNA1011833_S_NODE_9847_length_372_cov_5.595745_g9429_i0 PRJNA1011833 9847 372 5.595745 20.8161714 Bacteria 2 Bacteria Bacteria 149 7.36e-40   NR HSJ34736.1 2080302 g9429 i0 60.7 12.6370967741935 112 44 90.3 0 371 36 373 484 HSJ34736.1 betaine-aldehyde dehydrogenase [Acidimicrobiia bacterium] diamond 4701 149 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
30034779 30034779 PRJNA1011833_S_NODE_51291_length_161_cov_2.313559_g50871_i0 PRJNA1011833 51291 161 2.313559 3.72482999 Fodinicola acaciae 2681555 Bacteria Bacteria 41.6 0.0314   NR WP_163510641.1 2681555 g50871 i0 51.1 0.838509316770186 45 18 83.9 1 149 15 272 312 WP_163510641.1 serine hydrolase domain-containing protein [Fodinicola acaciae] diamond 135 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales   Fodinicola Fodinicola acaciae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;