RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1011833" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1011833 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28708647 28708647 PRJNA1011833_S_NODE_46587_length_170_cov_1.133858_g46167_i0 PRJNA1011833 46587 170 1.133858 1.9275586 Truepera radiovictrix 332249 Bacteria Bacteria 94.7 2.41e-21   NR WP_013178911.1 332249 g46167 i0 75 0.988235294117647 56 14 98.8 0 1 168 286 341 WP_013178911.1 acyl-ACP desaturase [Truepera radiovictrix] diamond 168 94.7 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
29182277 29182277 PRJNA1011833_S_NODE_43849_length_175_cov_2.151515_g43429_i0 PRJNA1011833 43849 175 2.151515 3.76515125 Trueperaceae bacterium 2026798 Bacteria Bacteria 71.6 8.95e-13   NR MDR9391477.1 2026798 g43429 i0 52.6 1.95428571428571 57 27 97.7 0 173 3 337 393 MDR9391477.1 tRNA guanosine(34) transglycosylase Tgt [Trueperaceae bacterium] diamond 342 71.6 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;