RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1011833" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1011833 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27034674 27034674 PRJNA1011833_S_NODE_45942_length_171_cov_1.500000_g45522_i0 PRJNA1011833 45942 171 1.5 2.565 Candidatus Methanoperedenaceae archaeon GB5 2072416 Archaea Archaea 69.3 1.42e-12   NR CAD7774282.1 2691038 g45522 i0 55.4 1.91228070175439 56 25 98.2 0 169 2 141 196 CAD7774282.1 Protein-L-isoaspartate O-methyltransferase [Candidatus Methanoperedenaceae archaeon GB50] diamond 327 69.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae   Candidatus Methanoperedenaceae archaeon GB50
28992973 28992973 PRJNA1011833_S_NODE_20908_length_263_cov_2.809091_g20488_i0 PRJNA1011833 20908 263 2.809091 7.38790933 Halobacterium jilantaiense 355548 Archaea Archaea 42.7 0.0444   NR WP_089668695.1 355548 g20488 i0 33.3 0.787072243346008 69 46 78.7 0 210 4 98 166 WP_089668695.1 tyrosine-type recombinase/integrase [Halobacterium jilantaiense] diamond 207 42.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium jilantaiense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;