RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1011833" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1011833 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27351046 27351046 PRJNA1011833_S_NODE_9623_length_375_cov_8.144578_g9205_i0 PRJNA1011833 9623 375 8.144578 30.5421675 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 70.1 4.39e-11   NR MBP9733486.1 2035772 g9205 i0 30.8 8.424 120 81 94.4 1 3 356 754 873 MBP9733486.1 M1 family metallopeptidase [Candidatus Omnitrophota bacterium] diamond 3159 70.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27943213 27943213 PRJNA1011833_S_NODE_5045_length_465_cov_8.492891_g4635_i0 PRJNA1011833 5045 465 8.492891 39.49194315 Pseudomonadati 3379134 Bacteria Bacteria 158 1.67e-44   NR MCH9613454.1 2052156 g4635 i0 51.6 12.8645161290323 155 74 100 1 465 1 160 313 MCH9613454.1 Transaldolase [Chlamydiia bacterium] diamond 5982 158 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
29971493 29971493 PRJNA1011833_S_NODE_33691_length_202_cov_1.207547_g33271_i0 PRJNA1011833 33691 202 1.207547 2.43924494 Parachlamydia sp. 2052048 Bacteria Bacteria 45.1 0.0034   NR PJD95628.1 2052048 g33271 i0 40.3 0.920792079207921 62 35 92.1 1 17 202 149 208 PJD95628.1 MAG: hypothetical protein CK425_07970 [Parachlamydia sp.] diamond 186 45.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;