RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1010780" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1010780 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26908067 26908067 PRJNA1010780_S_NODE_42242_length_198_cov_2.202454_g40953_i0 PRJNA1010780 42242 198 2.202454 4.36085892 Thermoproteota archaeon 2056631 Archaea Archaea 53.1 1.73e-6   NR MEM2637658.1 2056631 g40953 i0 45.9 0.924242424242424 61 33 92.4 0 191 9 106 166 MEM2637658.1 Rab family GTPase [Thermoproteota archaeon] diamond 183 53.1 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
28543212 28543212 PRJNA1010780_S_NODE_63707_length_150_cov_1.052174_g62418_i0 PRJNA1010780 63707 150 1.052174 1.578261 Archaea 2157 Archaea Archaea 52.8 2.96e-6   NR WP_011839102.1 2280 g62418 i0 46.9 12.92 49 26 98 0 149 3 362 410 WP_011839102.1 translation elongation factor EF-1 subunit alpha [Staphylothermus marinus] diamond 1938 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus marinus
29900819 29900819 PRJNA1010780_S_NODE_39891_length_207_cov_2.465116_g38602_i0 PRJNA1010780 39891 207 2.465116 5.10279012 Stenosarchaea group 2290931 Archaea Archaea 72 8.61e-13   NR UXD21335.1 940294 g38602 i0 49.3 1.91304347826087 67 34 97.1 0 202 2 43 109 UXD21335.1 ribosomal subunit interface protein [Ignicoccus pacificus DSM 13166] diamond 396 72 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignicoccus Ignicoccus pacificus
30129104 30129104 PRJNA1010780_S_NODE_45992_length_186_cov_1.483444_g44703_i0 PRJNA1010780 45992 186 1.483444 2.75920584 Thermoproteota archaeon 2056631 Archaea Archaea 49.3 8.85e-5   NR MFC1752448.1 2056631 g44703 i0 56.1 0.661290322580645 41 16 62.9 1 52 168 37 77 MFC1752448.1 right-handed parallel beta-helix repeat-containing protein [Thermoproteota archaeon] diamond 123 49.3 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30216518 30216518 PRJNA1010780_S_NODE_51252_length_172_cov_1.773723_g49963_i0 PRJNA1010780 51252 172 1.773723 3.05080356 root 1 Root_unresolved Root_unresolved 45.8 7.98e-4   NR MDQ6723886.1 2056631 g49963 i0 50 1.22093023255814 36 18 62.8 0 165 58 111 146 MDQ6723886.1 tetratricopeptide repeat protein [Thermoproteota archaeon] diamond 210 45.8 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31385998 31385998 PRJNA1010780_S_NODE_49256_length_177_cov_1.528169_g47967_i0 PRJNA1010780 49256 177 1.5281690000000001 2.70485913 Thermoprotei 183924 Archaea Archaea 47.8 2.7e-4   NR WP_338248899.1 54256 g47967 i0 50 6.50847457627119 48 24 81.4 0 34 177 127 174 WP_338248899.1 elongation factor EF-2 [Pyrodictium abyssi] diamond 1152 48.1 0.993762993762994 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrodictium Pyrodictium abyssi
32405916 32405916 PRJNA1010780_S_NODE_53559_length_167_cov_1.484848_g52270_i0 PRJNA1010780 53559 167 1.484848 2.47969616 Pyrobaculum ferrireducens 1104324 Archaea Archaea 58.2 4.8e-8   NR WP_148682546.1 1104324 g52270 i0 47.3 3.75449101796407 55 29 98.8 0 1 165 97 151 WP_148682546.1 GTP-binding protein [Pyrobaculum ferrireducens] diamond 627 58.2 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum ferrireducens
32658140 32658140 PRJNA1010780_S_NODE_52940_length_168_cov_1.939850_g51651_i0 PRJNA1010780 52940 168 1.93985 3.258948 Thermoprotei archaeon 2250277 Archaea Archaea 45.8 0.00109   NR RLG78519.1 2250277 g51651 i0 53.5 1.55357142857143 43 18 73.2 1 17 139 517 559 RLG78519.1 MAG: hypothetical protein DRO40_13760, partial [Thermoprotei archaeon] diamond 261 45.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei       Thermoprotei archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;