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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1010780" and tax_phylum = "Deferribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1010780 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29055846 29055846 PRJNA1010780_S_NODE_32388_length_247_cov_1.726415_g31099_i0 PRJNA1010780 32388 247 1.726415 4.26424505 Deferribacteraceae bacterium 2053543 Bacteria Bacteria 43.5 0.0214   NR MDR2884727.1 2053543 g31099 i0 33.8 0.97165991902834 80 53 97.2 0 4 243 645 724 MDR2884727.1 hypothetical protein [Deferribacteraceae bacterium] diamond 240 43.5 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae   Deferribacteraceae bacterium
29150764 29150764 PRJNA1010780_S_NODE_17989_length_451_cov_2.043269_g16713_i0 PRJNA1010780 17989 451 2.043269 9.21514319 Deferribacteraceae bacterium 2053543 Bacteria Bacteria 46.2 0.0186   NR MDR2869416.1 2053543 g16713 i0 54.5 0.219512195121951 33 15 22 0 283 381 196 228 MDR2869416.1 hypothetical protein [Deferribacteraceae bacterium] diamond 99 46.2 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae   Deferribacteraceae bacterium
29434351 29434351 PRJNA1010780_S_NODE_6330_length_1064_cov_4.619048_g5698_i0 PRJNA1010780 6330 1064 4.619048 49.14667072 Deferribacteraceae bacterium 2053543 Bacteria Bacteria 113 1.92e-23   NR MDR2884727.1 2053543 g5698 i0 29 1.80451127819549 303 189 80.9 9 46 906 121 413 MDR2884727.1 hypothetical protein [Deferribacteraceae bacterium] diamond 1920 113 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae   Deferribacteraceae bacterium
30445511 30445511 PRJNA1010780_S_NODE_26793_length_296_cov_2.337165_g25504_i0 PRJNA1010780 26793 296 2.337165 6.9180084 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 73.2 3.98e-14   NR PMP71422.1 477976 g25504 i0 46.7 1.82432432432432 90 46 91.2 2 2 271 38 125 PMP71422.1 MAG: gamma-glutamylcyclotransferase [Calditerrivibrio nitroreducens] diamond 540 73.2 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;