RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1010662" and tax_phylum = "Candidatus Peregrinibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1010662 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30951009 30951009 PRJNA1010662_P_NODE_7034_length_211_cov_1.179012_g6975_i0 PRJNA1010662 7034 211 1.179012 2.48771532 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 56.6 3.2e-7   NR MBI2453117.1 2030811 g6975 i0 41.2 0.966824644549763 68 36 93.8 2 205 8 1020 1085 MBI2453117.1 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Candidatus Peregrinibacteria bacterium] diamond 204 56.6 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;