RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1010662" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28992834 28992834 PRJNA1010662_S_NODE_4028_length_171_cov_2.250000_g3983_i0 PRJNA1010662 4028 171 2.25 3.8475 Helicobacter pylori 210 Bacteria Bacteria 46.2 5.4e-5   NR GAA8909252.1 210 g3983 i0 57.1 1.19298245614035 35 15 61.4 0 25 129 8 42 GAA8909252.1 hypothetical protein Kyoto166A_1650 [Helicobacter pylori] diamond 204 46.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29371463 29371463 PRJNA1010662_S_NODE_3689_length_178_cov_1.422222_g3644_i0 PRJNA1010662 3689 178 1.422222 2.53155516 Helicobacter pylori 210 Bacteria Bacteria 63.9 2.87e-11   NR WP_322538264.1 210 g3644 i0 51.7 2.02247191011236 60 28 99.4 1 178 2 16 75 WP_322538264.1 hypothetical protein, partial [Helicobacter pylori] diamond 360 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30003082 30003082 PRJNA1010662_P_NODE_6351_length_219_cov_0.917647_g6292_i0 PRJNA1010662 6351 219 0.917647 2.00964693 Sulfurimonas sp. 2022749 Bacteria Bacteria 42.4 0.0399   NR WP_299947353.1 2022749 g6292 i0 40.5 0.575342465753425 42 25 57.5 0 94 219 3502 3543 WP_299947353.1 calcium-binding protein [Sulfurimonas sp.] diamond 126 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;