RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1009807" and tax_kingdom = "Fungi"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1009807 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27571628 27571628 PRJNA1009807_S_NODE_2624_length_196_cov_1.050955_g2596_i0 PRJNA1009807 2624 196 1.050955 2.0598718 Ophiocordyceps australis 1399860 Fungi Fungi 42.4 0.0274   NR PHH61573.1 1399860 g2596 i0 45.5 0.673469387755102 44 19 59.7 1 27 143 449 492 PHH61573.1 hypothetical protein CDD81_8154 [Ophiocordyceps australis] diamond 132 42.4 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Ophiocordycipitaceae Ophiocordyceps Ophiocordyceps australis
30666371 30666371 PRJNA1009807_S_NODE_2453_length_201_cov_1.746914_g2425_i0 PRJNA1009807 2453 201 1.746914 3.51129714 Polychytrium aggregatum 110093 Fungi Fungi 50.4 2.01e-6   NR KAI9188549.1 110093 g2425 i0 50 0.686567164179104 46 23 68.7 0 182 45 1 46 KAI9188549.1 hypothetical protein BJ171DRAFT_549717 [Polychytrium aggregatum] diamond 138 50.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;