RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1009807" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA1009807 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28108234 28108234 PRJNA1009807_S_NODE_3645_length_171_cov_2.227273_g3617_i0 PRJNA1009807 3645 171 2.227273 3.80863683 Acetivibrio thermocellus BC1 1349417 Bacteria Bacteria 62 3.71e-10   NR CDG37541.1 1349417 g3617 i0 58 0.87719298245614 50 21 87.7 0 150 1 52 101 CDG37541.1 hypothetical protein CTHBC1_2972 [Acetivibrio thermocellus BC1] diamond 150 62 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Acetivibrio Acetivibrio thermocellus
30532513 30532513 PRJNA1009807_S_NODE_4313_length_160_cov_1.842975_g4285_i0 PRJNA1009807 4313 160 1.842975 2.94876 Actinomycetes 1760 Bacteria Bacteria 44.3 3.77e-4   NR GHD37715.1 141693 g4285 i0 66.7 1.25625 30 10 56.3 0 95 6 33 62 GHD37715.1 hypothetical protein GCM10007147_45940 [Nocardiopsis kunsanensis] diamond 201 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis kunsanensis
32184267 32184267 PRJNA1009807_S_NODE_2898_length_188_cov_1.355705_g2870_i0 PRJNA1009807 2898 188 1.355705 2.5487254 Veillonella 29465 Bacteria Bacteria 40.4 0.0426   NR WP_369407422.1 29465 g2870 i0 34 0.845744680851064 53 33 84.6 1 163 5 35 85 WP_369407422.1 MULTISPECIES: pentapeptide repeat-containing protein [Veillonella] diamond 159 40.4 1 Bacteria   Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella  
32500816 32500816 PRJNA1009807_S_NODE_3919_length_166_cov_2.574803_g3891_i0 PRJNA1009807 3919 166 2.574803 4.27417298 Dehalococcoides mccartyi 61435 Bacteria Bacteria 40.8 0.0091   NR PKH45859.1 61435 g3891 i0 71.4 0.506024096385542 28 8 50.6 0 61 144 33 60 PKH45859.1 hypothetical protein KKB3_00836 [Dehalococcoides mccartyi] diamond 84 40.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;