RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1008624" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1008624 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15457361 15457361 PRJNA1008624_P_NODE_9433_length_272_cov_2.677130_g9245_i0 PRJNA1008624 9433 272 2.67713 7.2817936 Cetobacterium sp. 2071632 Bacteria Bacteria 154 2.39e-41   NR WP_332485160.1 2071632 g9245 i0 84.1 0.970588235294118 88 14 97.1 0 269 6 392 479 WP_332485160.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase, partial [Cetobacterium sp.] diamond 264 154 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp.
27128878 27128878 PRJNA1008624_P_NODE_34402_length_164_cov_0.904348_g34214_i0 PRJNA1008624 34402 164 0.904348 1.48313072 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 100 3.259999999999999e-23   NR WP_047383563.1 1340502 g34214 i0 98 0.896341463414634 49 1 89.6 0 14 160 288 336 WP_047383563.1 IS21 family transposase [Cetobacterium sp. ZWU0022] diamond 147 100 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
27824395 27824395 PRJNA1008624_P_NODE_37024_length_162_cov_0.920354_g36836_i0 PRJNA1008624 37024 162 0.920354 1.49097348 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 108 2.9700000000000004e-27   NR WP_047383265.1 1340502 g36836 i0 100 0.962962962962963 52 0 96.3 0 5 160 126 177 WP_047383265.1 glucose-1-phosphate cytidylyltransferase [Cetobacterium sp. ZWU0022] diamond 156 108 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
29055748 29055748 PRJNA1008624_P_NODE_35408_length_163_cov_0.912281_g35220_i0 PRJNA1008624 35408 163 0.912281 1.48701803 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 107 3.69e-26   NR WP_047393843.1 1339239 g35220 i0 98.1 0.975460122699387 53 1 97.5 0 160 2 285 337 WP_047393843.1 SEC-C metal-binding domain-containing protein [Cetobacterium sp. ZOR0034] diamond 159 107 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;