RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1008624" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1008624 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27508664 27508664 PRJNA1008624_P_NODE_36523_length_162_cov_0.920354_g36335_i0 PRJNA1008624 36523 162 0.920354 1.49097348 Armatimonadia bacterium 2663015 Bacteria Bacteria 57 1.27e-8   NR MEN6301359.1 2663015 g36335 i0 56.1 0.759259259259259 41 18 75.9 0 1 123 48 88 MEN6301359.1 hypothetical protein [Armatimonadia bacterium] diamond 123 57 1 Bacteria   Bacillati Armatimonadota Armatimonadia       Armatimonadia bacterium
28013870 28013870 PRJNA1008624_P_NODE_35285_length_163_cov_0.912281_g35097_i0 PRJNA1008624 35285 163 0.912281 1.48701803 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 72.4 8.37e-14   NR MCC6686595.1 2682144 g35097 i0 64 0.920245398773006 50 18 92 0 7 156 160 209 MCC6686595.1 helix-turn-helix domain-containing protein [Fimbriimonadaceae bacterium] diamond 150 72.4 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
28353473 28353473 PRJNA1008624_P_NODE_34226_length_164_cov_0.904348_g34038_i0 PRJNA1008624 34226 164 0.904348 1.48313072 Bacteria 2 Bacteria Bacteria 89.4 4.64e-19   NR MCE9557454.1 2033014 g34038 i0 81.1 2.89024390243902 53 10 97 0 2 160 129 181 MCE9557454.1 carbamoyl-phosphate synthase large subunit [Armatimonadota bacterium] diamond 474 89.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28834573 28834573 PRJNA1008624_P_NODE_20528_length_190_cov_1.312057_g20340_i0 PRJNA1008624 20528 190 1.312057 2.4929083 Armatimonadaceae bacterium 2933160 Bacteria Bacteria 55.1 8.07e-7   NR HVK02735.1 2933160 g20340 i0 50.8 0.931578947368421 59 23 83.7 3 4 162 52 110 HVK02735.1 hypothetical protein [Armatimonadaceae bacterium] diamond 177 55.1 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae   Armatimonadaceae bacterium
31045888 31045888 PRJNA1008624_P_NODE_30395_length_167_cov_0.881356_g30207_i0 PRJNA1008624 30395 167 0.881356 1.47186452 Armatimonas sp. 1872638 Bacteria Bacteria 62.8 1.03e-9   NR WP_395094781.1 1872638 g30207 i0 66.7 0.970059880239521 54 18 97 0 5 166 265 318 WP_395094781.1 glycerate kinase [Armatimonas sp.] diamond 162 62.8 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae Armatimonas Armatimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;