RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1008049" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1008049 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30216476 30216476 PRJNA1008049_S_NODE_3012_length_168_cov_10.345324_g2994_i0 PRJNA1008049 3012 168 10.345324 17.38014432 root 1 Root_unresolved Root_unresolved 120 7.43e-30   NR XP_030109804.2 10090 g2994 i0 100 10.8035714285714 55 0 98.2 0 167 3 89 143 XP_030109804.2 uncharacterized protein Gm52666 [Mus musculus] diamond 1815 120 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30343511 30343511 PRJNA1008049_S_NODE_1252_length_199_cov_8.994118_g1234_i0 PRJNA1008049 1252 199 8.994118 17.89829482 root 1 Root_unresolved Root_unresolved 133 9.439999999999999e-35   NR XP_030110853.2 10090 g1234 i0 100 14.6984924623116 65 0 98 0 3 197 122 186 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 2925 133 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30406535 30406535 PRJNA1008049_S_NODE_213_length_311_cov_4.234043_g195_i0 PRJNA1008049 213 311 4.234043 13.16787373 root 1 Root_unresolved Root_unresolved 152 2.51e-42   NR XP_036010302.1 10090 g195 i0 97.3 9.27974276527331 74 2 71.4 0 3 224 40 113 XP_036010302.1 uncharacterized protein Gm53410 [Mus musculus] diamond 2886 152 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31195670 31195670 PRJNA1008049_S_NODE_395_length_262_cov_6.669528_g377_i0 PRJNA1008049 395 262 6.669528 17.47416336 root 1 Root_unresolved Root_unresolved 183 6.25e-53   NR XP_030110853.2 10090 g377 i0 100 14.8969465648855 87 0 99.6 0 1 261 236 322 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 3903 183 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;