RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1008049" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1008049 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27319121 27319121 PRJNA1008049_S_NODE_1623_length_188_cov_42.490566_g1605_i0 PRJNA1008049 1623 188 42.490566 79.88226408 Helicobacter pylori 210 Bacteria Bacteria 60.1 2.75e-10   NR GAA9125267.1 210 g1605 i0 83.9 0.49468085106383 31 5 49.5 0 55 147 4 34 GAA9125267.1 hypothetical protein Kyoto190A_0800 [Helicobacter pylori] diamond 93 60.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30690466 30690466 PRJNA1008049_S_NODE_953_length_211_cov_41.434066_g935_i0 PRJNA1008049 953 211 41.434066 87.42587926 Bacteria 2 Bacteria Bacteria 51.2 1.95e-5   NR GAA9247141.1 210 g935 i0 100 0.597156398104265 21 0 29.9 0 176 114 1 21 GAA9247141.1 hypothetical protein Kyoto199A_1050 [Helicobacter pylori] diamond 126 51.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31139954 31139954 PRJNA1008049_S_NODE_735_length_225_cov_4.500000_g717_i0 PRJNA1008049 735 225 4.5 10.125 uncultured Campylobacter sp. 218934 Bacteria Bacteria 67.4 4.34e-12   NR WP_299224394.1 218934 g717 i0 90.2 1.06666666666667 41 1 50.7 1 27 140 1 41 WP_299224394.1 hypothetical protein [uncultured Campylobacter sp.] diamond 240 67.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter uncultured Campylobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;