RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1005695" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1005695 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27982104 27982104 PRJNA1005695_P_NODE_24625_length_302_cov_2.681223_g23773_i0 PRJNA1005695 24625 302 2.681223 8.09729346 Campylobacter sp. 2 205 Bacteria Bacteria 83.6 6.77e-18   NR WP_214120692.1 2836735 g23773 i0 82 0.496688741721854 50 9 49.7 0 5 154 59 108 WP_214120692.1 hypothetical protein, partial [Campylobacter sp. 2018MI01] diamond 150 83.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 2018MI01
32902630 32902630 PRJNA1005695_P_NODE_30520_length_270_cov_1.583756_g29668_i0 PRJNA1005695 30520 270 1.583756 4.2761412 Pseudomonadati 3379134 Bacteria Bacteria 49.7 1.76e-4   NR WP_013681676.1 84405 g29668 i0 49 5.32222222222222 49 24 53.3 1 120 263 329 377 WP_013681676.1 HU family DNA-binding protein [Hippea maritima] diamond 1437 50.1 0.992015968063872 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales Hippeaceae Hippea Hippea maritima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;