RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1005695" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1005695 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28140179 28140179 PRJNA1005695_P_NODE_27325_length_286_cov_1.464789_g26473_i0 PRJNA1005695 27325 286 1.464789 4.18929654 Armatimonadota bacterium 2033014 Bacteria Bacteria 45.8 0.00216   NR HCA47543.1 2033014 g26473 i0 39.6 0.503496503496504 48 29 50.3 0 20 163 83 130 HCA47543.1 hypothetical protein [Armatimonadota bacterium] diamond 144 45.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28802743 28802743 PRJNA1005695_P_NODE_34988_length_252_cov_1.608939_g34136_i0 PRJNA1005695 34988 252 1.608939 4.05452628 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 167 1.74e-48   NR MFN8139294.1 2682145 g34136 i0 97.6 0.988095238095238 83 2 98.8 0 251 3 195 277 MFN8139294.1 histidinol-phosphate transaminase [Fimbriimonadales bacterium] diamond 249 167 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
29087295 29087295 PRJNA1005695_P_NODE_25828_length_295_cov_1.405405_g24976_i0 PRJNA1005695 25828 295 1.405405 4.14594475 Armatimonadota bacterium 2033014 Bacteria Bacteria 86.7 1.05e-17   NR HIE52877.1 2033014 g24976 i0 48.9 0.894915254237288 88 39 89.5 1 30 293 246 327 HIE52877.1 NADH:flavin oxidoreductase [Armatimonadota bacterium] diamond 264 86.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;