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contig_metadata

23 rows where analysis = "diamond", bioproject = "PRJNA1005695" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 23 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1005695 · 23 ✖

analysis 1

  • diamond · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23953531 23953531 PRJNA1005695_P_NODE_38599_length_245_cov_0.906977_g37747_i0 PRJNA1005695 38599 245 0.906977 2.22209365 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 139 3.0600000000000004e-36   NR MEZ5235907.1 2201156 g37747 i0 95.6 0.83265306122449 68 3 83.3 0 1 204 864 931 MEZ5235907.1 vitamin B12-dependent ribonucleotide reductase [Acidimicrobiales bacterium] diamond 204 139 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
26844838 26844838 PRJNA1005695_P_NODE_28521_length_280_cov_1.502415_g27669_i0 PRJNA1005695 28521 280 1.502415 4.206762 Streptomyces sp. NBC_ 1931 Bacteria Bacteria 42.7 0.0379   NR WP_266711828.1 2975652 g27669 i0 42.4 0.632142857142857 59 33 63.2 1 72 248 125 182 WP_266711828.1 GNAT family N-acetyltransferase [Streptomyces sp. NBC_00102] diamond 177 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBC_00102
26907919 26907919 PRJNA1005695_P_NODE_41762_length_228_cov_2.006452_g40910_i0 PRJNA1005695 41762 228 2.006452 4.57471056 Saccharomonospora xinjiangensis 75294 Bacteria Bacteria 43.1 0.0109   NR WP_006238214.1 75294 g40910 i0 47.9 0.631578947368421 48 18 53.9 1 125 3 17 64 WP_006238214.1 DoxX family protein [Saccharomonospora xinjiangensis] diamond 144 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora xinjiangensis
27666496 27666496 PRJNA1005695_P_NODE_14684_length_398_cov_0.750769_g13832_i0 PRJNA1005695 14684 398 0.750769 2.98806062 Catellatospora aurea 1337874 Bacteria Bacteria 45.4 0.00838   NR WP_376810015.1 1337874 g13832 i0 42.4 0.444723618090452 59 27 43.7 3 222 395 62 114 WP_376810015.1 hypothetical protein [Catellatospora aurea] diamond 177 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Catellatospora Catellatospora aurea
28045181 28045181 PRJNA1005695_P_NODE_39465_length_243_cov_0.917647_g38613_i0 PRJNA1005695 39465 243 0.917647 2.22988221 Kocuria sp. CPCC 2 1871328 Bacteria Bacteria 50.4 6.88e-5   NR WP_387741833.1 3058914 g38613 i0 45.5 0.814814814814815 66 36 81.5 0 2 199 39 104 WP_387741833.1 M28 family peptidase [Kocuria sp. CPCC 205315] diamond 198 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria nitroreducens
28076680 28076680 PRJNA1005695_P_NODE_20425_length_334_cov_0.957854_g19573_i0 PRJNA1005695 20425 334 0.957854 3.19923236 Kitasatospora sp. NPDC 1871188 Bacteria Bacteria 47 0.00327   NR WP_396310128.1 3364054 g19573 i0 35.1 0.87125748502994 97 54 84.4 3 320 39 19 109 WP_396310128.1 MFS transporter [Kitasatospora sp. NPDC050543] diamond 291 47 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. NPDC050543
28140189 28140189 PRJNA1005695_P_NODE_36705_length_249_cov_0.886364_g35853_i0 PRJNA1005695 36705 249 0.886364 2.20704636 Blastococcus sp. CT_GayMR2 1873459 Bacteria Bacteria 131 1.23e-33   NR WP_135158521.1 2559609 g35853 i0 81.5 0.975903614457831 81 15 97.6 0 247 5 66 146 WP_135158521.1 bifunctional 3'-5' exonuclease/DNA polymerase [Blastococcus sp. CT_GayMR20] diamond 243 131 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp. CT_GayMR20
28550621 28550621 PRJNA1005695_P_NODE_34087_length_255_cov_0.989011_g33235_i0 PRJNA1005695 34087 255 0.989011 2.52197805 Actinomycetales bacterium 1911520 Bacteria Bacteria 45.8 0.00347   NR MBU6147104.1 1911520 g33235 i0 42.6 0.717647058823529 61 26 61.2 2 99 254 121 181 MBU6147104.1 hypothetical protein [Actinomycetales bacterium] diamond 183 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales     Actinomycetales bacterium
29371395 29371395 PRJNA1005695_P_NODE_30049_length_272_cov_2.145729_g29197_i0 PRJNA1005695 30049 272 2.145729 5.83638288 Jiangellaceae bacterium 2768363 Bacteria Bacteria 42.7 0.0472   NR HEY9409042.1 2768363 g29197 i0 46.4 0.617647058823529 56 26 57.4 2 1 156 130 185 HEY9409042.1 shikimate dehydrogenase [Jiangellaceae bacterium] diamond 168 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jiangellales Jiangellaceae   Jiangellaceae bacterium
29458291 29458291 PRJNA1005695_P_NODE_38990_length_244_cov_0.912281_g38138_i0 PRJNA1005695 38990 244 0.912281 2.22596564 FCB group 1783270 Bacteria Bacteria 53.5 5.81e-6   NR WP_037503838.1 363832 g38138 i0 41.3 2.54508196721311 75 36 89.8 3 22 240 51 119 WP_037503838.1 hypothetical protein [Solirubrobacter soli] diamond 621 53.9 0.992578849721707 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae Solirubrobacter Solirubrobacter soli
29781732 29781732 PRJNA1005695_P_NODE_14731_length_397_cov_1.975309_g13879_i0 PRJNA1005695 14731 397 1.975309 7.84197673 Streptomyces alfalfae 1642299 Bacteria Bacteria 53.5 7.29e-6   NR WP_198501348.1 1642299 g13879 i0 34.7 1.68513853904282 118 55 88.4 5 11 361 43 139 WP_198501348.1 CBM20 domain-containing protein [Streptomyces alfalfae] diamond 669 53.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces alfalfae
30003037 30003037 PRJNA1005695_P_NODE_33471_length_257_cov_2.423913_g32619_i0 PRJNA1005695 33471 257 2.423913 6.22945641 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 43.1 0.033   NR HZU74151.1 2201156 g32619 i0 31.7 0.957198443579767 82 48 86.4 2 7 228 51 132 HZU74151.1 MFS transporter [Acidimicrobiales bacterium] diamond 246 43.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
30476981 30476981 PRJNA1005695_P_NODE_33933_length_255_cov_2.417582_g33081_i0 PRJNA1005695 33933 255 2.417582 6.1648341 Demequina sp. 2050685 Bacteria Bacteria 43.5 0.0231   NR WP_296666963.1 2050685 g33081 i0 38.6 0.670588235294118 57 34 67.1 1 246 76 320 375 WP_296666963.1 leucyl aminopeptidase [Demequina sp.] diamond 171 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Demequinaceae Demequina Demequina sp.
30508451 30508451 PRJNA1005695_P_NODE_31533_length_266_cov_1.233161_g30681_i0 PRJNA1005695 31533 266 1.233161 3.28020826 Actinomyces urogenitalis DORA_12 1403939 Bacteria Bacteria 44.3 0.00243   NR ETJ01449.1 1403939 g30681 i0 54.3 0.394736842105263 35 16 39.5 0 242 138 1 35 ETJ01449.1 MAG: Cell wall-associated hydrolase [Actinomyces urogenitalis DORA_12] diamond 105 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces urogenitalis
31298344 31298344 PRJNA1005695_P_NODE_28055_length_282_cov_1.937799_g27203_i0 PRJNA1005695 28055 282 1.937799 5.46459318 Saccharomonospora xinjiangensis 75294 Bacteria Bacteria 43.5 0.0146   NR WP_006238214.1 75294 g27203 i0 44.9 0.521276595744681 49 20 44.7 1 4 129 27 75 WP_006238214.1 DoxX family protein [Saccharomonospora xinjiangensis] diamond 147 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora xinjiangensis
31361825 31361825 PRJNA1005695_P_NODE_35016_length_252_cov_1.363128_g34164_i0 PRJNA1005695 35016 252 1.363128 3.43508256 Streptomyces sp. NPDC 1931 Bacteria Bacteria 43.9 0.0129   NR WP_385772057.1 3347002 g34164 i0 32 2.0952380952381 97 50 98.8 3 252 4 24 118 WP_385772057.1 hypothetical protein [Streptomyces sp. NPDC059917] diamond 528 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC059917
31488420 31488420 PRJNA1005695_P_NODE_31056_length_268_cov_1.389744_g30204_i0 PRJNA1005695 31056 268 1.389744 3.72451392 Ornithinimicrobium sp. 1977084 Bacteria Bacteria 43.1 0.0325   NR WP_303375145.1 1977084 g30204 i0 36.5 0.951492537313433 85 48 91.8 3 18 263 40 121 WP_303375145.1 1,2-phenylacetyl-CoA epoxidase subunit PaaC [Ornithinimicrobium sp.] diamond 255 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Ornithinimicrobium Ornithinimicrobium sp.
31544077 31544077 PRJNA1005695_P_NODE_31076_length_268_cov_1.194872_g30224_i0 PRJNA1005695 31076 268 1.194872 3.20225696 Bacteria 2 Bacteria Bacteria 46.2 0.00275   NR WP_199044285.1 980294 g30224 i0 41.7 2.87686567164179 84 39 85.1 4 37 264 167 248 WP_199044285.1 S1 family peptidase [Glycomyces salinus] diamond 771 46.6 0.991416309012876 Bacteria   Bacillati Actinomycetota Actinomycetes Glycomycetales Glycomycetaceae Glycomyces Glycomyces salinus
31646164 31646164 PRJNA1005695_P_NODE_36157_length_250_cov_0.881356_g35305_i0 PRJNA1005695 36157 250 0.881356 2.20339 Actinomycetota bacterium 2900548 Bacteria Bacteria 82 1.98e-16   NR MEM9610047.1 2900548 g35305 i0 48.8 4.812 80 41 96 0 3 242 217 296 MEM9610047.1 TIGR01777 family oxidoreductase [Actinomycetota bacterium] diamond 1203 82 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31955080 31955080 PRJNA1005695_P_NODE_19817_length_339_cov_1.691729_g18965_i0 PRJNA1005695 19817 339 1.691729 5.73496131 Actinomycetota 201174 Bacteria Bacteria 76.6 1.36e-13   NR WP_125610720.1 1629051 g18965 i0 43.1 4.91150442477876 116 58 96.5 3 5 331 346 460 WP_125610720.1 sugar porter family MFS transporter [Specibacter cremeus] diamond 1665 76.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Specibacter Specibacter cremeus
32025989 32025989 PRJNA1005695_P_NODE_39058_length_244_cov_0.912281_g38206_i0 PRJNA1005695 39058 244 0.912281 2.22596564 Pseudoclavibacter sp. 1915061 Bacteria Bacteria 143 1.77e-38   NR HHW51487.1 1915061 g38206 i0 98.5 0.836065573770492 68 1 83.6 0 41 244 1 68 HHW51487.1 cysteine--tRNA ligase [Pseudoclavibacter sp.] diamond 204 143 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pseudoclavibacter Pseudoclavibacter sp.
32374144 32374144 PRJNA1005695_P_NODE_28559_length_280_cov_1.188406_g27707_i0 PRJNA1005695 28559 280 1.188406 3.3275368 unclassified Blastococcus 2619396 Bacteria Bacteria 43.9 0.0219   NR WP_200489685.1 2619396 g27707 i0 36.5 0.675 63 37 64.3 1 89 268 41 103 WP_200489685.1 MULTISPECIES: MBL fold metallo-hydrolase [unclassified Blastococcus] diamond 189 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus  
32595451 32595451 PRJNA1005695_P_NODE_27580_length_285_cov_1.103774_g26728_i0 PRJNA1005695 27580 285 1.103774 3.1457559 Propionicimonas sp. 1955623 Bacteria Bacteria 43.1 0.043   NR HEY3545929.1 1955623 g26728 i0 44.3 0.642105263157895 61 27 62.1 2 37 213 29 84 HEY3545929.1 DMT family transporter [Propionicimonas sp.] diamond 183 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Propionicimonas Propionicimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;