RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1004255" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1004255 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29623399 29623399 PRJNA1004255_S_NODE_11230_length_191_cov_2.540541_g11022_i0 PRJNA1004255 11230 191 2.540541 4.85243331 Candidatus Saccharimonadia bacterium 2890869 Bacteria Bacteria 42.4 0.0253   NR HEY6736276.1 2890869 g11022 i0 42.9 0.769633507853403 49 26 77 1 6 152 229 275 HEY6736276.1 acyltransferase family protein [Candidatus Saccharimonadia bacterium] diamond 147 42.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia       Candidatus Saccharimonadia bacterium
30919311 30919311 PRJNA1004255_S_NODE_6794_length_235_cov_1.223958_g6586_i0 PRJNA1004255 6794 235 1.223958 2.8763013 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 95.5 5.4400000000000005e-21   NR HMI51600.1 2973664 g6586 i0 67.6 0.868085106382979 68 22 86.8 0 230 27 33 100 HMI51600.1 POTRA domain-containing protein [Candidatus Saccharimonadales bacterium] diamond 204 95.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
31171650 31171650 PRJNA1004255_S_NODE_10415_length_198_cov_1.516129_g10207_i0 PRJNA1004255 10415 198 1.516129 3.00193542 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 124 1.41e-33   NR HMI52660.1 2973664 g10207 i0 93.8 1.96969696969697 65 4 98.5 0 2 196 97 161 HMI52660.1 pyridoxamine 5'-phosphate oxidase family protein [Candidatus Saccharimonadales bacterium] diamond 390 124 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
32595429 32595429 PRJNA1004255_S_NODE_4400_length_275_cov_3.594828_g4192_i0 PRJNA1004255 4400 275 3.594828 9.885777 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 66.2 1.95e-10   NR HMI50288.1 2973664 g4192 i0 68.1 0.512727272727273 47 15 51.3 0 275 135 249 295 HMI50288.1 tetratricopeptide repeat protein [Candidatus Saccharimonadales bacterium] diamond 141 66.2 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;