RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1004255" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 2 ✖

bioproject 1

  • PRJNA1004255 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26741728 26741728 PRJNA1004255_S_NODE_4541_length_272_cov_4.882096_g4333_i0 PRJNA1004255 4541 272 4.882096 13.27930112 Synechococcus 1129 Bacteria Bacteria 43.1 0.0358   NR WP_170953846.1 337067 g4333 i0 46.3 0.904411764705882 41 22 45.2 0 154 32 175 215 WP_170953846.1 FAD-binding domain-containing protein [Synechococcus sp. UW105] diamond 246 43.1 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. UW105
28866087 28866087 PRJNA1004255_S_NODE_10288_length_199_cov_1.807692_g10080_i0 PRJNA1004255 10288 199 1.807692 3.59730708 Synechococcaceae bacterium WB4_1_0192 2448788 Bacteria Bacteria 40.8 0.0306   NR NBW64034.1 2448788 g10080 i0 39.2 0.768844221105528 51 29 73.9 1 10 156 7 57 NBW64034.1 hypothetical protein [Synechococcaceae bacterium WB4_1_0192] diamond 153 40.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae   Synechococcaceae bacterium WB4_1_0192

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;