RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1002816" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1002816 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7805375 7805375 PRJNA1002816_P_NODE_15127_length_279_cov_1.470874_g14967_i0 PRJNA1002816 15127 279 1.470874 4.10373846 Eubacteriales 186802 Bacteria Bacteria 125 1.5099999999999999e-32   NR MCQ2484223.1 2044939 g14967 i0 64.1 4.8494623655914 92 31 98.9 1 277 2 157 246 MCQ2484223.1 aspartate--ammonia ligase [Clostridia bacterium] diamond 1353 125 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
27659058 27659058 PRJNA1002816_P_NODE_13644_length_298_cov_1.022222_g13484_i0 PRJNA1002816 13644 298 1.022222 3.04622156 FCB group 1783270 Bacteria Bacteria 122 3.9999999999999997e-32   NR WP_033675763.1 574375 g13484 i0 62.7 4.19798657718121 83 31 83.6 0 9 257 80 162 WP_033675763.1 type 1 glutamine amidotransferase domain-containing protein [Bacillus gaemokensis] diamond 1251 123 0.991869918699187 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus gaemokensis
28360803 28360803 PRJNA1002816_P_NODE_9946_length_354_cov_1.096085_g9786_i0 PRJNA1002816 9946 354 1.096085 3.8801409 Exiguobacterium aurantiacum 33987 Bacteria Bacteria 42.4 0.0177   NR WP_233005565.1 33987 g9786 i0 64.5 0.26271186440678 31 11 26.3 0 247 339 24 54 WP_233005565.1 hypothetical protein, partial [Exiguobacterium aurantiacum] diamond 93 42.4 1 Bacteria   Bacillati Bacillota Bacilli Bacillales   Exiguobacterium Exiguobacterium aurantiacum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;