RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1002816" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1002816 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27792723 27792723 PRJNA1002816_P_NODE_16924_length_257_cov_1.673913_g16764_i0 PRJNA1002816 16924 257 1.673913 4.30195641 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 129 2.09e-34   NR MFN7987048.1 2651171 g16764 i0 69 1.9727626459144 84 24 98.1 1 4 255 219 300 MFN7987048.1 zinc metalloprotease [Thermoanaerobaculia bacterium] diamond 507 129 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28739837 28739837 PRJNA1002816_P_NODE_4347_length_544_cov_0.951168_g4187_i0 PRJNA1002816 4347 544 0.951168 5.17435392 Acidobacteriota bacterium 1978231 Bacteria Bacteria 46.2 0.0311   NR MBM3726731.1 1978231 g4187 i0 29.1 0.645220588235294 117 76 61.8 2 445 110 149 263 MBM3726731.1 VWA domain-containing protein [Acidobacteriota bacterium] diamond 351 46.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30413881 30413881 PRJNA1002816_P_NODE_18493_length_248_cov_0.880000_g18333_i0 PRJNA1002816 18493 248 0.88 2.1824 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 46.2 0.00217   NR HLK50433.1 2212468 g18333 i0 46.6 0.701612903225806 58 12 67.7 2 74 241 1 41 HLK50433.1 TIGR00266 family protein [Bryobacteraceae bacterium] diamond 174 46.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;