RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1002816" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA1002816 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12906545 12906545 PRJNA1002816_P_NODE_15311_length_277_cov_1.352941_g15151_i0 PRJNA1002816 15311 277 1.352941 3.74764657 unclassified Cetobacterium 2630983 Bacteria Bacteria 183 1.6699999999999999e-52   NR WP_047381993.1 2630983 g15151 i0 100 0.996389891696751 92 0 99.6 0 1 276 304 395 WP_047381993.1 MULTISPECIES: DNA helicase RecQ [unclassified Cetobacterium] diamond 276 183 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
27855692 27855692 PRJNA1002816_P_NODE_17225_length_254_cov_1.033149_g17065_i0 PRJNA1002816 17225 254 1.033149 2.62419846 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 168 4.59e-50   NR WP_294095125.1 527638 g17065 i0 98.8 0.992125984251969 84 1 99.2 0 3 254 58 141 WP_294095125.1 Rpn family recombination-promoting nuclease/putative transposase [uncultured Cetobacterium sp.] diamond 252 168 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
29118965 29118965 PRJNA1002816_P_NODE_18269_length_249_cov_0.875000_g18109_i0 PRJNA1002816 18269 249 0.875 2.17875 unclassified Cetobacterium 2630983 Bacteria Bacteria 172 6.58e-50   NR WP_047383707.1 2630983 g18109 i0 100 0.987951807228916 82 0 98.8 0 2 247 142 223 WP_047383707.1 MULTISPECIES: carbohydrate porin [unclassified Cetobacterium] diamond 246 172 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
30034550 30034550 PRJNA1002816_P_NODE_15531_length_275_cov_0.910891_g15371_i0 PRJNA1002816 15531 275 0.910891 2.50495025 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 104 1.7699999999999998e-24   NR WP_047393843.1 1339239 g15371 i0 92.2 1.11272727272727 51 4 55.6 0 1 153 309 359 WP_047393843.1 SEC-C metal-binding domain-containing protein [Cetobacterium sp. ZOR0034] diamond 306 104 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
30539939 30539939 PRJNA1002816_P_NODE_3713_length_588_cov_2.392233_g3554_i0 PRJNA1002816 3713 588 2.392233 14.06633004 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 362 2.9400000000000003e-123   NR WP_047393843.1 1339239 g3554 i0 91.3 0.994897959183674 195 17 99.5 0 587 3 40 234 WP_047393843.1 SEC-C metal-binding domain-containing protein [Cetobacterium sp. ZOR0034] diamond 585 362 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
31077249 31077249 PRJNA1002816_P_NODE_12235_length_316_cov_2.860082_g12075_i0 PRJNA1002816 12235 316 2.860082 9.03785912 unclassified Cetobacterium 2630983 Bacteria Bacteria 198 2.41e-63   NR WP_047384607.1 2630983 g12075 i0 96.2 0.996835443037975 105 4 99.7 0 1 315 14 118 WP_047384607.1 MULTISPECIES: hypothetical protein [unclassified Cetobacterium] diamond 315 198 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;