RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1002570" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27666446 27666446 PRJNA1002570_P_NODE_28404_length_271_cov_2.242424_g28209_i0 PRJNA1002570 28404 271 2.242424 6.07696904 Fasciola gigantica 46835 Platyhelminthes Platyhelminthes 57.4 3.63e-7   NR TPP59324.1 46835 g28209 i0 56.1 1.33948339483395 41 18 45.4 0 269 147 263 303 TPP59324.1 Aromatic-L-amino-acid decarboxylase [Fasciola gigantica] diamond 363 57.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola gigantica
32145101 32145101 PRJNA1002570_P_NODE_37118_length_250_cov_0.870056_g36923_i0 PRJNA1002570 37118 250 0.870056 2.17514 Metazoa 33208 Platyhelminthes Platyhelminthes 43.5 0.0213   NR KAA0190260.1 27845 g36923 i0 28.7 1.836 87 55 96 1 3 242 282 368 KAA0190260.1 TLR4 interactor with leucine rich repeat [Fasciolopsis buskii] diamond 459 43.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciolopsis Fasciolopsis buskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;