RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1002570" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002570 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27729751 27729751 PRJNA1002570_P_NODE_18864_length_295_cov_1.247748_g18669_i0 PRJNA1002570 18864 295 1.247748 3.6808566 Ignavibacteria bacterium 2053306 Bacteria Bacteria 55.1 2.15e-6   NR MBI1808219.1 2053306 g18669 i0 34.4 0.915254237288136 90 59 91.5 0 286 17 154 243 MBI1808219.1 hypothetical protein [Ignavibacteria bacterium] diamond 270 55.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28108164 28108164 PRJNA1002570_P_NODE_4685_length_501_cov_1.950935_g4491_i0 PRJNA1002570 4685 501 1.950935 9.77418435 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 268 4.28e-80   NR MDR3627851.1 2651163 g4491 i0 71.3 0.982035928143713 164 47 98.2 0 498 7 860 1023 MDR3627851.1 glycosyltransferase [Ignavibacteriaceae bacterium] diamond 492 268 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
28455775 28455775 PRJNA1002570_P_NODE_22906_length_284_cov_1.601896_g22711_i0 PRJNA1002570 22906 284 1.601896 4.54938464 Ignavibacteria bacterium 2053306 Bacteria Bacteria 82.8 9.33e-18   NR MBX7042151.1 2053306 g22711 i0 64.4 0.623239436619718 59 21 62.3 0 3 179 86 144 MBX7042151.1 phosphohydrolase [Ignavibacteria bacterium] diamond 177 82.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28834464 28834464 PRJNA1002570_P_NODE_16368_length_310_cov_1.299578_g16173_i0 PRJNA1002570 16368 310 1.299578 4.0286918 Ignavibacteria bacterium 2053306 Bacteria Bacteria 98.6 4.289999999999999e-23   NR PLX31367.1 2053306 g16173 i0 64.3 1.38387096774194 70 25 67.7 0 98 307 3 72 PLX31367.1 MAG: methyltransferase type 12 [Ignavibacteria bacterium] diamond 429 98.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30729486 30729486 PRJNA1002570_P_NODE_17574_length_299_cov_3.924779_g17379_i0 PRJNA1002570 17574 299 3.924779 11.73508921 Ignavibacteria bacterium 2053306 Bacteria Bacteria 50.4 6.56e-5   NR MFA5404635.1 2053306 g17379 i0 47.1 0.511705685618729 51 26 51.2 1 145 297 114 163 MFA5404635.1 RNA ligase family protein [Ignavibacteria bacterium] diamond 153 50.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;