RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA1002570" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002570 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7805234 7805234 PRJNA1002570_P_NODE_7387_length_413_cov_3.326471_g7193_i0 PRJNA1002570 7387 413 3.326471 13.73832523 Sus scrofa 9823 Chordata Chordata 226 5.64e-69   NR XP_020938199.1 9823 g7193 i0 100 2.46246973365617 113 0 82.1 0 411 73 407 519 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 1017 226 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
26876477 26876477 PRJNA1002570_P_NODE_26381_length_276_cov_2.000000_g26186_i0 PRJNA1002570 26381 276 2 5.52 Polypterus senegalus 55291 Chordata Chordata 80.9 1.85e-16   NR XP_039631340.1 55291 g26186 i0 55.7 1.97826086956522 61 27 66.3 0 252 70 112 172 XP_039631340.1 uncharacterized protein C7orf50 homolog isoform X2 [Polypterus senegalus] diamond 546 80.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
27128790 27128790 PRJNA1002570_P_NODE_27802_length_273_cov_1.370000_g27607_i0 PRJNA1002570 27802 273 1.37 3.7401 Anas acuta 28680 Chordata Chordata 43.1 0.0375   NR XP_068526470.1 28680 g27607 i0 35.9 0.857142857142857 78 42 76.9 3 218 9 298 375 XP_068526470.1 paired box protein Pax-4 isoform X1 [Anas acuta] diamond 234 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas acuta
28013787 28013787 PRJNA1002570_P_NODE_42825_length_242_cov_2.650888_g42630_i0 PRJNA1002570 42825 242 2.650888 6.41514896 Phrynosoma platyrhinos 52577 Chordata Chordata 70.5 6.29e-12   NR KAH0627017.1 52577 g42630 i0 62.2 3.18595041322314 45 17 55.8 0 135 1 66 110 KAH0627017.1 hypothetical protein JD844_002377, partial [Phrynosoma platyrhinos] diamond 771 70.9 0.994358251057828 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Phrynosoma Phrynosoma platyrhinos
28802680 28802680 PRJNA1002570_P_NODE_29888_length_267_cov_3.432990_g29693_i0 PRJNA1002570 29888 267 3.43299 9.1660833 Suncus etruscus 109475 Chordata Chordata 57 4.73e-7   NR XP_049633682.1 109475 g29693 i0 48.5 4.47191011235955 66 34 74.2 0 65 262 170 235 XP_049633682.1 pendrin [Suncus etruscus] diamond 1194 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
29395448 29395448 PRJNA1002570_P_NODE_15109_length_310_cov_5.700422_g14914_i0 PRJNA1002570 15109 310 5.700422 17.6713082 Chordata 7711 Chordata Chordata 50.4 1.99e-5   NR AAH26581.1 10090 g14914 i0 78.4 1.87741935483871 37 8 35.8 0 197 307 55 91 AAH26581.1 Ube2m protein [Mus musculus] diamond 582 50.8 0.992125984251969 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29655038 29655038 PRJNA1002570_P_NODE_43270_length_242_cov_0.911243_g43075_i0 PRJNA1002570 43270 242 0.911243 2.20520806 Styela clava 7725 Chordata Chordata 56.2 6.61e-7   NR XP_039262600.1 7725 g43075 i0 42.1 5.28099173553719 76 43 93 1 242 18 772 847 XP_039262600.1 slit homolog 2 protein-like isoform X1 [Styela clava] diamond 1278 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
29869095 29869095 PRJNA1002570_P_NODE_31751_length_262_cov_2.529101_g31556_i0 PRJNA1002570 31751 262 2.529101 6.62624462 root 1 Root_unresolved Root_unresolved 93.2 1.53e-20   NR XP_038672598.1 7830 g31556 i0 51.2 11.3702290076336 82 40 93.9 0 261 16 102 183 XP_038672598.1 uncharacterized protein LOC119976269 [Scyliorhinus canicula] diamond 2979 93.6 0.995726495726496 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
30855879 30855879 PRJNA1002570_P_NODE_42334_length_243_cov_1.358824_g42139_i0 PRJNA1002570 42334 243 1.358824 3.30194232 Lipotes vexillifer 118797 Chordata Chordata 42.7 0.0378   NR XP_007469789.1 118797 g42139 i0 39.4 0.814814814814815 66 32 79 5 8 199 542 601 XP_007469789.1 PREDICTED: LOW QUALITY PROTEIN: kielin/chordin-like protein [Lipotes vexillifer] diamond 198 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Lipotidae Lipotes Lipotes vexillifer
31108507 31108507 PRJNA1002570_P_NODE_26995_length_275_cov_1.316832_g26800_i0 PRJNA1002570 26995 275 1.316832 3.621288 Microcaecilia unicolor 1415580 Chordata Chordata 79.3 7.36e-15   NR XP_030071142.1 1415580 g26800 i0 66.1 7.74545454545455 62 21 67.6 0 273 88 93 154 XP_030071142.1 striatin-3 isoform X3 [Microcaecilia unicolor] diamond 2130 79.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor
32279211 32279211 PRJNA1002570_P_NODE_31019_length_264_cov_3.068063_g30824_i0 PRJNA1002570 31019 264 3.068063 8.09968632 Peromyscus leucopus 10041 Chordata Chordata 45.4 0.00551   NR XP_028716152.1 10041 g30824 i0 37.5 0.727272727272727 64 40 72.7 0 14 205 895 958 XP_028716152.1 LOW QUALITY PROTEIN: fibronectin type III domain-containing protein 1 [Peromyscus leucopus] diamond 192 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Peromyscus Peromyscus leucopus
32626649 32626649 PRJNA1002570_P_NODE_35280_length_252_cov_2.351955_g35085_i0 PRJNA1002570 35280 252 2.351955 5.9269266 Pygoscelis adeliae 9238 Chordata Chordata 46.6 0.00185   NR XP_009333557.1 9238 g35085 i0 42.6 1.83333333333333 68 35 81 2 40 243 164 227 XP_009333557.1 PREDICTED: acetyl-CoA acetyltransferase, mitochondrial [Pygoscelis adeliae] diamond 462 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Sphenisciformes Spheniscidae Pygoscelis Pygoscelis adeliae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;