RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1002570" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27090300 27090300 PRJNA1002570_P_NODE_7722_length_406_cov_2.177177_g7528_i0 PRJNA1002570 7722 406 2.177177 8.83933862 PVC group 1783257 Bacteria Bacteria 120 5.55e-30   NR OGX30246.1 1801851 g7528 i0 75.3 2.39408866995074 81 20 59.9 0 404 162 207 287 OGX30246.1 MAG: RNA-splicing ligase RtcB, partial [Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_01_FULL_48_9] diamond 972 120 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_01_FULL_48_9
30065929 30065929 PRJNA1002570_P_NODE_8752_length_387_cov_1.802548_g8557_i0 PRJNA1002570 8752 387 1.802548 6.97586076 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 113 3.02e-26   NR MCB9747511.1 2035772 g8557 i0 46.4 2.13178294573643 138 61 96.9 4 9 383 185 322 MCB9747511.1 response regulator [Candidatus Omnitrophota bacterium] diamond 825 113 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;