RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1002570" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1002570 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28392458 28392458 PRJNA1002570_P_NODE_29306_length_269_cov_1.571429_g29111_i0 PRJNA1002570 29306 269 1.571429 4.22714401 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 72 2.44e-12   NR XP_004341192.1 1257118 g29111 i0 44.2 0.858736059479554 77 43 85.9 0 37 267 281 357 XP_004341192.1 WD repeatcontaining protein 1, putative [Acanthamoeba castellanii str. Neff] diamond 231 72 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28897521 28897521 PRJNA1002570_P_NODE_25928_length_277_cov_2.137255_g25733_i0 PRJNA1002570 25928 277 2.137255 5.92019635 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 56.6 7.24e-7   NR XP_644128.1 352472 g25733 i0 32.6 5.82671480144404 89 37 96.4 1 270 4 113 178 XP_644128.1 hypothetical protein DDB_G0274663 [Dictyostelium discoideum AX4] diamond 1614 56.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29237674 29237674 PRJNA1002570_P_NODE_24069_length_281_cov_2.701923_g23874_i0 PRJNA1002570 24069 281 2.701923 7.59240363 Evosea 2605435 Evosea other_Eukaryota 94.4 4.38e-20   NR XP_640709.1 352472 g23874 i0 48.9 6.77935943060498 90 46 96.1 0 272 3 254 343 XP_640709.1 ABC transporter G family protein [Dictyostelium discoideum AX4] diamond 1905 94.7 0.996832101372756 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;