RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1001940" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1001940 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26970955 26970955 PRJNA1001940_S_NODE_156842_length_173_cov_2.907692_g155788_i0 PRJNA1001940 156842 173 2.907692 5.0303071600000004 Helicobacter pylori 210 Bacteria Bacteria 40.4 0.0199   NR GAA9139522.1 210 g155788 i0 61.3 0.53757225433526 31 12 53.8 0 124 32 39 69 GAA9139522.1 hypothetical protein Kyoto190A_3090 [Helicobacter pylori] diamond 93 40.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29150589 29150589 PRJNA1001940_S_NODE_88169_length_231_cov_2.553191_g87115_i0 PRJNA1001940 88169 231 2.553191 5.89787121 Helicobacter pylori 210 Bacteria Bacteria 53.5 5.27e-7   NR GAA6955505.1 210 g87115 i0 56.1 0.532467532467532 41 18 53.2 0 214 92 1 41 GAA6955505.1 hypothetical protein Kyoto211A_1640 [Helicobacter pylori] diamond 123 53.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29244968 29244968 PRJNA1001940_S_NODE_194089_length_155_cov_2.366071_g193035_i0 PRJNA1001940 194089 155 2.366071 3.66741005 Helicobacter pylori 210 Bacteria Bacteria 104 1.34e-27   NR WP_322538256.1 210 g193035 i0 96.1 0.987096774193548 51 2 98.7 0 1 153 41 91 WP_322538256.1 hypothetical protein, partial [Helicobacter pylori] diamond 153 104 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29813153 29813153 PRJNA1001940_S_NODE_118291_length_199_cov_2.153846_g117237_i0 PRJNA1001940 118291 199 2.153846 4.28615354 Helicobacter pylori 210 Bacteria Bacteria 40.8 0.00952   NR GAA9028113.1 210 g117237 i0 62.1 0.437185929648241 29 11 43.7 0 158 72 17 45 GAA9028113.1 hypothetical protein Kyoto181A_8460 [Helicobacter pylori] diamond 87 40.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30065859 30065859 PRJNA1001940_S_NODE_172072_length_165_cov_3.754098_g171018_i0 PRJNA1001940 172072 165 3.754098 6.1942617 Helicobacter pylori 210 Bacteria Bacteria 53.9 1.32e-7   NR GAA8686254.1 210 g171018 i0 96.8 0.563636363636364 31 1 56.4 0 52 144 1 31 GAA8686254.1 hypothetical protein Kyoto145A_1480 [Helicobacter pylori] diamond 93 53.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;