RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1000943" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1000943 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27950430 27950430 PRJNA1000943_P_NODE_5045_length_354_cov_5.373665_g4908_i0 PRJNA1000943 5045 354 5.373665 19.0227741 Chlamydiales bacterium 2047757 Bacteria Bacteria 111 1.46e-28   NR MCP5470420.1 2047757 g4908 i0 48.7 0.991525423728814 117 60 99.2 0 3 353 1 117 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 351 111 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29553034 29553034 PRJNA1000943_P_NODE_4410_length_376_cov_1.204620_g4273_i0 PRJNA1000943 4410 376 1.20462 4.5293712 Bacteria 2 Bacteria Bacteria 202 9.15e-62   NR WP_237559247.1 340071 g4273 i0 75.8 4.9468085106383 124 30 98.9 0 4 375 43 166 WP_237559247.1 PLP-dependent cysteine synthase family protein [Criblamydia sequanensis] diamond 1860 204 0.990196078431373 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
32374030 32374030 PRJNA1000943_P_NODE_4319_length_379_cov_1.529412_g4182_i0 PRJNA1000943 4319 379 1.529412 5.79647148 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 160 1.2499999999999996e-43   NR MBA3239128.1 2052176 g4182 i0 58 0.941952506596306 119 50 94.2 0 366 10 219 337 MBA3239128.1 histidine phosphatase family protein [Parachlamydiaceae bacterium] diamond 357 160 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;