RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1000943" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1000943 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2695297 2695297 PRJNA1000943_P_NODE_12963_length_248_cov_0.891429_g12825_i0 PRJNA1000943 12963 248 0.891429 2.21074392 Pseudobacteriovorax 1769746 Bacteria Bacteria 121 7.1e-30   NR NRA68712.1 2020859 g12825 i0 73.8 6.7258064516129 80 21 96.8 0 247 8 148 227 NRA68712.1 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Pseudobacteriovorax sp.] diamond 1668 122 0.991803278688525 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Pseudobacteriovoracaceae Pseudobacteriovorax Pseudobacteriovorax sp.
20546245 20546245 PRJNA1000943_P_NODE_12317_length_250_cov_0.881356_g12179_i0 PRJNA1000943 12317 250 0.881356 2.20339 Bdellovibrio sp. 28-41-41 1970323 Bacteria Bacteria 171 1.64e-53   NR OYZ13569.1 1970323 g12179 i0 98.8 0.996 83 1 99.6 0 1 249 2 84 OYZ13569.1 MAG: thioredoxin [Bdellovibrio sp. 28-41-41] diamond 249 171 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41
29213576 29213576 PRJNA1000943_P_NODE_13869_length_246_cov_0.901734_g13731_i0 PRJNA1000943 13869 246 0.901734 2.21826564 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 107 4.63e-26   NR WP_061834069.1 959 g13731 i0 67.1 2.89024390243902 79 26 96.3 0 10 246 1 79 WP_061834069.1 SDR family oxidoreductase [Bdellovibrio bacteriovorus] diamond 711 107 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
30413790 30413790 PRJNA1000943_P_NODE_11793_length_251_cov_0.876404_g11655_i0 PRJNA1000943 11793 251 0.876404 2.19977404 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 70.9 2.12e-12   NR MCC6137820.1 2026715 g11655 i0 97 0.394422310756972 33 1 39.4 0 250 152 230 262 MCC6137820.1 DUF1338 domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 99 70.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31038343 31038343 PRJNA1000943_P_NODE_4095_length_388_cov_0.946032_g3958_i0 PRJNA1000943 4095 388 0.946032 3.67060416 Pseudomonadati 3379134 Bacteria Bacteria 111 1.99e-28   NR MFA4994930.1 2053517 g3958 i0 49.6 15.0927835051546 113 54 85.1 3 337 8 5 117 MFA4994930.1 single-stranded DNA-binding protein [Bdellovibrionales bacterium] diamond 5856 112 0.991071428571429 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31298229 31298229 PRJNA1000943_P_NODE_12975_length_248_cov_0.891429_g12837_i0 PRJNA1000943 12975 248 0.891429 2.21074392 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 58.2 1.46e-7   NR MBT7608812.1 2081706 g12837 i0 45.6 1.28225806451613 57 31 69 0 197 27 676 732 MBT7608812.1 penicillin acylase family protein [Bacteriovoracaceae bacterium] diamond 318 58.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32847060 32847060 PRJNA1000943_P_NODE_6960_length_309_cov_2.644068_g6822_i0 PRJNA1000943 6960 309 2.644068 8.17017012 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 51.6 4.04e-5   NR MCO4753379.1 2081706 g6822 i0 34.4 0.902912621359223 93 50 83.5 3 5 262 72 160 MCO4753379.1 glutathione S-transferase [Bacteriovoracaceae bacterium] diamond 279 51.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;