RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1000943" and tax_kingdom = "Promethearchaeati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Promethearchaeati · 3 ✖

bioproject 1

  • PRJNA1000943 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26749045 26749045 PRJNA1000943_P_NODE_7661_length_297_cov_2.401786_g7523_i0 PRJNA1000943 7661 297 2.401786 7.13330442 Promethearchaeota archaeon CR_4 1849166 Archaea Archaea 42.7 0.0263   NR OLS12533.1 1849166 g7523 i0 34.6 0.818181818181818 81 48 81.8 2 45 287 11 86 OLS12533.1 MAG: hypothetical protein RBG13Loki_3844 [Promethearchaeota archaeon CR_4] diamond 243 42.7 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon CR_4
29465546 29465546 PRJNA1000943_P_NODE_2070_length_528_cov_2.057143_g1933_i0 PRJNA1000943 2070 528 2.057143 10.86171504 Candidatus Lokiarchaeum ossiferum 2951803 Archaea Archaea 47.8 0.00728   NR UYP44496.1 2951803 g1933 i0 42.9 0.278409090909091 49 27 27.8 1 62 208 140 187 UYP44496.1 hypothetical protein NEF87_000781 [Candidatus Lokiarchaeum ossiferum] diamond 147 47.8 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Candidatus Lokiarchaeum Candidatus Lokiarchaeum ossiferum
30413792 30413792 PRJNA1000943_P_NODE_12553_length_249_cov_0.886364_g12415_i0 PRJNA1000943 12553 249 0.886364 2.20704636 Promethearchaeati archaeon 2591838 Archaea Archaea 50.4 2.02e-5   NR NHJ49103.1 2591838 g12415 i0 37.3 0.710843373493976 59 37 71.1 0 214 38 40 98 NHJ49103.1 hypothetical protein [Promethearchaeati archaeon] diamond 177 50.4 1 Archaea   Promethearchaeati           Promethearchaeati archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;