RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1000943" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1000943 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30413791 30413791 PRJNA1000943_P_NODE_12213_length_250_cov_0.881356_g12075_i0 PRJNA1000943 12213 250 0.881356 2.20339 Deltaproteobacteria bacterium GWA2_54_12 1797808 Bacteria Bacteria 58.9 6.44e-8   NR OGP13641.1 1797808 g12075 i0 46.7 2.7 75 35 90 2 234 10 6 75 OGP13641.1 MAG: hypothetical protein A2052_06410 [Deltaproteobacteria bacterium GWA2_54_12] diamond 675 58.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWA2_54_12
32120902 32120902 PRJNA1000943_P_NODE_9298_length_273_cov_1.475000_g9160_i0 PRJNA1000943 9298 273 1.475 4.02675 SAR324 cluster bacterium 2024889 Bacteria Bacteria 67.4 1.79e-11   NR MEC8223348.1 2024889 g9160 i0 43.2 1.78021978021978 81 45 87.9 1 268 29 88 168 MEC8223348.1 glutathione S-transferase family protein [SAR324 cluster bacterium] diamond 486 67.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;