RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1000943" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 4 ✖

bioproject 1

  • PRJNA1000943 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23097248 23097248 PRJNA1000943_P_NODE_1119_length_710_cov_2.938776_g990_i0 PRJNA1000943 1119 710 2.938776 20.8653096 Methanosarcinales archaeon 2250255 Archaea Archaea 435 1.41e-150   NR RYE83110.1 2250255 g990 i0 93 0.959154929577465 227 16 95.9 0 710 30 190 416 RYE83110.1 MAG: translation elongation factor EF-1 subunit alpha, partial [Methanosarcinales archaeon] diamond 681 435 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
26844736 26844736 PRJNA1000943_P_NODE_3041_length_442_cov_3.639566_g2904_i0 PRJNA1000943 3041 442 3.639566 16.08688172 Methanothrix sp. 90426 Archaea Archaea 60.1 2.77e-7   NR HPJ29788.1 90426 g2904 i0 29.5 0.895927601809955 132 74 77.4 4 428 87 543 673 HPJ29788.1 beta/gamma crystallin-related protein [Methanothrix sp.] diamond 396 60.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
26939276 26939276 PRJNA1000943_P_NODE_9282_length_273_cov_1.560000_g9144_i0 PRJNA1000943 9282 273 1.56 4.2588 Candidatus Methanophagales archaeon 2056316 Archaea Archaea 55.8 1.28e-6   NR RJS74969.1 2056316 g9144 i0 39 1.8021978021978 82 48 89 2 21 263 382 462 RJS74969.1 MAG: PKD domain-containing protein [Candidatus Methanophagales archaeon] diamond 492 55.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales     Candidatus Methanophagales archaeon
27160510 27160510 PRJNA1000943_P_NODE_15042_length_243_cov_0.917647_g14904_i0 PRJNA1000943 15042 243 0.917647 2.22988221 Haloferax sp. DFSO6 2253 Archaea Archaea 42.4 0.0294   NR WP_410765577.1 3388652 g14904 i0 39.3 0.753086419753086 61 36 75.3 1 61 243 6 65 WP_410765577.1 OsmC family protein [Haloferax sp. DFSO60] diamond 183 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. DFSO60

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;