RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB9859" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB9859 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26876425 26876425 PRJEB9859_P_NODE_3641_length_263_cov_3.632479_g3606_i0 PRJEB9859 3641 263 3.632479 9.55341977 Acrostichus sp. RS5 669107 Nematoda Nematoda 58.9 8.02e-9   NR ACV21050.1 669107 g3606 i0 58.5 1.3574144486692 53 18 60.5 1 210 52 67 115 ACV21050.1 large subunit ribosomal protein 35, partial [Acrostichus sp. RS5083] diamond 357 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus sp. RS5083
27318978 27318978 PRJEB9859_P_NODE_5603_length_242_cov_1.042254_g5568_i0 PRJEB9859 5603 242 1.042254 2.52225468 Mesorhabditis spiculigera 96644 Nematoda Nematoda 49.7 1.32e-4   NR CAJ0567478.1 96644 g5568 i0 34.4 0.793388429752066 64 36 71.9 1 241 68 365 428 CAJ0567478.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 192 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;