RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB9859" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB9859 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31132530 31132530 PRJEB9859_P_NODE_2855_length_286_cov_20.634241_g2820_i0 PRJEB9859 2855 286 20.634241 59.01392926 Actinomycetes 1760 Bacteria Bacteria 48.9 3.65e-4   NR MFN8102636.1 1785 g2820 i0 67.9 1.77272727272727 28 9 29.4 0 285 202 91 118 MFN8102636.1 aldo/keto reductase [Mycobacterium sp.] diamond 507 49.3 0.991886409736308 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
31361689 31361689 PRJEB9859_P_NODE_6756_length_218_cov_8.222222_g6721_i0 PRJEB9859 6756 218 8.222222 17.92444396 Streptomyces sp. NPDC 1931 Bacteria Bacteria 45.1 0.00399   NR WP_389901571.1 3346409 g6721 i0 50 2.35321100917431 48 23 66.1 1 59 202 32 78 WP_389901571.1 endonuclease/exonuclease/phosphatase family protein [Streptomyces sp. NPDC058257] diamond 513 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC058257
32532290 32532290 PRJEB9859_P_NODE_7239_length_215_cov_126.467742_g7204_i0 PRJEB9859 7239 215 126.467742 271.9056453 Lawsonella clevelandensis 1528099 Bacteria Bacteria 68.2 2.79e-11   NR WP_304136041.1 1528099 g7204 i0 97 0.46046511627907 33 1 46 0 214 116 592 624 WP_304136041.1 hypothetical protein [Lawsonella clevelandensis] diamond 99 68.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;