RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB9859" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB9859 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28265907 28265907 PRJEB9859_P_NODE_5566_length_242_cov_1.042254_g5531_i0 PRJEB9859 5566 242 1.042254 2.52225468 Acidobacteriota bacterium 1978231 Bacteria Bacteria 47 2.21e-4   NR MBI2817484.1 1978231 g5531 i0 56.8 1.04132231404959 44 19 54.5 0 15 146 40 83 MBI2817484.1 RNA-binding protein [Acidobacteriota bacterium] diamond 252 47 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28297608 28297608 PRJEB9859_P_NODE_5186_length_244_cov_1.032558_g5151_i0 PRJEB9859 5186 244 1.032558 2.51944152 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 124 3.66e-34   NR HJT65251.1 2283092 g5151 i0 95.1 3.73770491803279 61 3 75 0 221 39 1 61 HJT65251.1 tail fiber protein [Pyrinomonadaceae bacterium] diamond 912 124 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29932435 29932435 PRJEB9859_P_NODE_4731_length_247_cov_1.018349_g4696_i0 PRJEB9859 4731 247 1.018349 2.51532203 Bacteria 2 Bacteria Bacteria 154 1.8199999999999998e-43   NR PYS45778.1 1978231 g4696 i0 97.4 61.8461538461538 76 2 92.3 0 3 230 7 82 PYS45778.1 MAG: NADH-quinone oxidoreductase subunit D [Acidobacteriota bacterium] diamond 15276 154 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31772652 31772652 PRJEB9859_P_NODE_8037_length_201_cov_4.395349_g8002_i0 PRJEB9859 8037 201 4.395349 8.83465149 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 42 0.0388   NR MDR3737318.1 2052142 g8002 i0 44.2 0.641791044776119 43 24 64.2 0 184 56 270 312 MDR3737318.1 hypothetical protein [Acidobacteriaceae bacterium] diamond 129 42 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;