RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB8827" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB8827 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32923284 32923284 PRJEB8827h_S_NODE_27849_length_177_cov_1.408451_g27830_i0 PRJEB8827 27849 177 1.408451 2.49295827 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 70.5 2.16e-13   NR KAK6028982.1 6317 g27830 i0 75 8.25423728813559 44 11 74.6 0 174 43 116 159 KAK6028982.1 ribosomal protein L15 [Ostertagia ostertagi] diamond 1461 71.2 0.990168539325843 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
32982459 32982459 PRJEB8827b_S_NODE_5379_length_207_cov_1085.662791_g5327_i0 PRJEB8827 5379 207 1085.662791 2247.32197737 Trichinella pseudospiralis 6337 Nematoda Nematoda 70.9 2.94e-12   NR KRX92917.1 6337 g5327 i0 72.7 0.63768115942029 44 12 63.8 0 204 73 152 195 KRX92917.1 Ubiquitin-60S ribosomal protein L40 [Trichinella pseudospiralis] diamond 132 70.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
33084987 33084987 PRJEB8827h_S_NODE_21718_length_181_cov_3.952055_g21699_i0 PRJEB8827 21718 181 3.952055 7.15321955 Trichinella pseudospiralis 6337 Nematoda Nematoda 46.6 1.79e-4   NR KRZ34780.1 6337 g21699 i0 60 1.25966850828729 40 16 66.3 0 179 60 75 114 KRZ34780.1 40S ribosomal protein S25 [Trichinella pseudospiralis] diamond 228 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
33084992 33084992 PRJEB8827h_S_NODE_6438_length_198_cov_4.834356_g6419_i0 PRJEB8827 6438 198 4.834356 9.57202488 Pristionchus fissidentatus 1538716 Nematoda Nematoda 53.5 3.11e-7   NR GMT14341.1 1538716 g6419 i0 69.2 3.10606060606061 39 12 59.1 0 179 63 60 98 GMT14341.1 hypothetical protein PFISCL1PPCAC_5638, partial [Pristionchus fissidentatus] diamond 615 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;