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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJEB8827" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB8827 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26074038 26074038 PRJEB8827e_S_NODE_43197_length_151_cov_1.379310_g43169_i0 PRJEB8827 43197 151 1.37931 2.0827581 Trachemys scripta elegans 31138 Chordata Chordata 95.1 1.13e-23   NR XP_034619274.1 31138 g43169 i0 91.5 229.76821192053 47 4 93.4 0 3 143 61 107 XP_034619274.1 40S ribosomal protein S27-like isoform X2 [Trachemys scripta elegans] diamond 34695 95.1 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Trachemys Trachemys scripta
26346386 26346386 PRJEB8827f_S_NODE_27311_length_159_cov_2.354839_g27291_i0 PRJEB8827 27311 159 2.354839 3.74419401 Opisthokonta 33154 Chordata Chordata 70.9 3.98e-13   NR XP_064419590.1 7897 g27291 i0 81.4 12.1509433962264 43 8 81.1 0 1 129 185 227 XP_064419590.1 elongation factor 1-beta [Latimeria chalumnae] diamond 1932 71.2 0.995786516853933 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
32931336 32931336 PRJEB8827g_S_NODE_9793_length_160_cov_2.384000_g9772_i0 PRJEB8827 9793 160 2.384 3.8144 Alligator mississippiensis 8496 Chordata Chordata 55.1 5.39e-7   NR XP_059582170.1 8496 g9772 i0 84.4 6.225 32 5 60 0 160 65 108 139 XP_059582170.1 uncharacterized protein LOC106740424 [Alligator mississippiensis] diamond 996 55.1 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
32940499 32940499 PRJEB8827b_S_NODE_25977_length_179_cov_1.451389_g25925_i0 PRJEB8827 25977 179 1.451389 2.59798631 root 1 Root_unresolved Root_unresolved 43.5 0.00829   NR GAB1296029.1 105296 g25925 i0 40 1.20670391061453 50 22 80.4 2 27 170 86 129 GAB1296029.1 Olfactory receptor [Apodemus speciosus] diamond 216 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
32948472 32948472 PRJEB8827f_S_NODE_4426_length_218_cov_32.737705_g4406_i0 PRJEB8827 4426 218 32.737705 71.3681969 Branchiostoma floridae 7739 Chordata Chordata 44.7 0.00389   NR XP_035674994.1 7739 g4406 i0 61.5 0.357798165137615 26 10 35.8 0 195 118 165 190 XP_035674994.1 tubulin alpha-1 chain-like [Branchiostoma floridae] diamond 78 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32948540 32948540 PRJEB8827h_S_NODE_3434_length_210_cov_1.525714_g3415_i0 PRJEB8827 3434 210 1.525714 3.2039994 Phallusia mammillata 59560 Chordata Chordata 97.4 8.9e-23   NR CAB3265762.1 59560 g3415 i0 71.4 2.7 63 18 90 0 208 20 157 219 CAB3265762.1 40S ribosomal protein S3 [Phallusia mammillata] diamond 567 97.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
33033842 33033842 PRJEB8827h_S_NODE_15780_length_185_cov_11.333333_g15761_i0 PRJEB8827 15780 185 11.333333 20.96666605 Branchiostoma floridae 7739 Chordata Chordata 44.3 0.00356   NR XP_035674994.1 7739 g15761 i0 61.5 0.421621621621622 26 10 42.2 0 27 104 165 190 XP_035674994.1 tubulin alpha-1 chain-like [Branchiostoma floridae] diamond 78 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
33145321 33145321 PRJEB8827f_S_NODE_23439_length_162_cov_1.771654_g23419_i0 PRJEB8827 23439 162 1.771654 2.87007948 Gymnophiona 8445 Chordata Chordata 42.7 0.00106   NR XP_029463224.1 194408 g23419 i0 63.4 2.83333333333333 41 13 72.2 1 122 6 1 41 XP_029463224.1 thymosin beta-15B [Rhinatrema bivittatum] diamond 459 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
33153215 33153215 PRJEB8827h_S_NODE_15792_length_185_cov_4.533333_g15773_i0 PRJEB8827 15792 185 4.533333 8.38666605 Nyctereutes procyonoides 34880 Chordata Chordata 78.2 3.46e-16   NR XP_055194079.1 34880 g15773 i0 62.7 74.627027027027 59 22 95.7 0 2 178 119 177 XP_055194079.1 60S ribosomal protein L23a-like [Nyctereutes procyonoides] diamond 13806 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
33170336 33170336 PRJEB8827h_S_NODE_42856_length_160_cov_1.488000_g42837_i0 PRJEB8827 42856 160 1.488 2.3808 Petromyzon marinus 7757 Chordata Chordata 44.3 8.97e-4   NR XP_032801518.1 7757 g42837 i0 95.2 1.18125 21 1 39.4 0 159 97 84 104 XP_032801518.1 cytochrome c-like [Petromyzon marinus] diamond 189 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
33179538 33179538 PRJEB8827h_S_NODE_38768_length_167_cov_2.113636_g38749_i0 PRJEB8827 38768 167 2.113636 3.52977212 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89 4.09e-19   NR XP_035692085.1 7739 g38749 i0 69.1 6.89820359281437 55 17 98.8 0 3 167 332 386 XP_035692085.1 LOW QUALITY PROTEIN: S-adenosylmethionine synthase-like [Branchiostoma floridae] diamond 1152 89 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;