RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB8827" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB8827 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32982765 32982765 PRJEB8827g_S_NODE_315_length_440_cov_4.592593_g296_i0 PRJEB8827 315 440 4.592593 20.2074092 Propionibacterium freudenreichii 1744 Bacteria Bacteria 54.3 1.4e-6   NR WP_404908996.1 1744 g296 i0 49.1 0.361363636363636 53 27 36.1 0 2 160 29 81 WP_404908996.1 hypothetical protein, partial [Propionibacterium freudenreichii] diamond 159 54.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii
33016680 33016680 PRJEB8827f_S_NODE_24668_length_161_cov_2.690476_g24648_i0 PRJEB8827 24668 161 2.690476 4.33166636 Actinomycetota bacterium 2900548 Bacteria Bacteria 42.4 0.0153   NR TMK61151.1 2900548 g24648 i0 48.8 0.763975155279503 41 19 72.7 1 144 28 55 95 TMK61151.1 MAG: ABC transporter ATP-binding protein [Actinomycetota bacterium] diamond 123 42.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
33170212 33170212 PRJEB8827f_S_NODE_2648_length_264_cov_4.441048_g2628_i0 PRJEB8827 2648 264 4.441048 11.72436672 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 73.2 5.33e-14   NR MCP3885490.1 2021380 g2628 i0 64.3 0.636363636363636 56 20 63.6 0 242 75 96 151 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 168 73.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;